KEGG   Rattus norvegicus (rat): 361821
Entry
361821            CDS       T01003                                 
Symbol
Col6a2
Name
(RefSeq) collagen alpha-2(VI) chain precursor
  KO
K06238  collagen type VI alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno04820  Cytoskeleton in muscle cells
rno04974  Protein digestion and absorption
rno05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    361821 (Col6a2)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    361821 (Col6a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    361821 (Col6a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    361821 (Col6a2)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    361821 (Col6a2)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    361821 (Col6a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    361821 (Col6a2)
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    361821 (Col6a2)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   361821 (Col6a2)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   361821 (Col6a2)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   361821 (Col6a2)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 Ins134_P3_kin_N
Other DBs
NCBI-GeneID: 361821
NCBI-ProteinID: NP_001094211
RGD: 1305585
Ensembl: ENSRNOG00000001254
UniProt: Q5EB88 A6JKC0
Position
20:12021182..12048932
AA seq 1027 aa
MTTTTKMLQGSFSVLLLGGLLGVLHAQQQEAISPDISTTDRNNNCPEKADCPVNVYFVLD
TSESVAMQSPTDSLLYHMQQFVPQFISQLQNEFYLEQVALSWRYGGLHFSDQVEVFSPPG
SDRASFTKSLQGIRSFRRGTFTDCALANMTQQIRQHVGRGVVNFAVVITDGHVTGNPCGG
IKMQAERAREEGIRLFAVAPNRNLNEQGLRDIANTPHELYRNNYATMRPDSTEIDQDTIN
RIIKVMKHEAYGECYKVSCLEIPGPHGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG
PIGFPGPKGVPGFKGEKGEFGSDGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGSRG
PDGYPGEAGSPGEQGDQGAKGDSGRPGRRGPPGNPGDKGSKGYRGNSGAPGSPGVKGGKG
GPGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEIGSKGAKGDRGLPG
PRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEPGP
PGPEGGRGDFGLKGAPGRKGEKGEPADPGPPGEPGPRGPRGIPGPEGEPGPPGDPGLTEC
DVMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDP
KSETGTRVGVVQYSHEGTFEAIRLDDERVNSLSSFKEAVKNLEWIAGGTWTPSALKFAYN
QLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHETHESENL
YSIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELYVAQCTQRPV
DIVFLLDGSERLGEQNFYKARRFVEEVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF
PLTYNVTTIHEALERTTYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVT
GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSLAQPSFFD
RFIRWIC
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgacgactactaccaagatgctccagggttctttttctgtgctcctgcttgggggactc
ttgggggtcctccatgcccagcagcaggaagccatctcacctgatatctctactactgac
aggaacaacaactgtccagagaaggctgactgcccagtcaacgtgtacttcgtgttggac
acctcggagagcgtggccatgcagtcccccacagacagcctgctttatcacatgcagcag
ttcgtaccacaatttatcagccagctgcagaacgagttctacctggagcaggtggccctg
agctggcgctatggtggcctacacttctcggaccaggtggaggtgttcagccccccaggc
agcgaccgggcctccttcactaagagcctacaaggcatccgctccttccgcaggggcacc
ttcactgactgtgccttggccaacatgacccagcagatccggcagcacgtaggccggggt
gtagtcaactttgccgtggtcatcaccgatggccacgtcacaggcaatccctgtgggggc
atcaaaatgcaggctgagcgtgcccgcgaggagggcatccggctctttgccgtggccccc
aataggaacctaaatgaacaaggcctgcgggatatcgccaacaccccacatgagctatac
cgaaacaactatgccaccatgcgacctgactctactgagattgaccaggacaccatcaac
cgcatcatcaaggtcatgaaacatgaagcctacggagagtgctacaaggtgagctgcctg
gagattccgggaccccacggacccaagggttaccgaggacagaagggcgccaagggcaac
atgggcgagccaggagaacctggacagaaaggacgacagggagaccctggcattgaaggc
cccattggattcccaggacccaagggtgtgcctggcttcaagggagagaagggtgaattc
ggatcagatggtcggaagggagctccgggtctagcaggcaagaacggaacagatggacag
aagggcaaactgggccgtattgggcctcctggttgcaagggagacccgggaagtcggggc
cccgatggataccccggagaagctggaagcccgggagagcaaggagaccaaggtgccaag
ggggactctggccgcccaggacgcaggggaccaccaggaaatcctggagacaaaggaagc
aagggatatcgaggcaacagtggagctcccggaagtccaggagtgaaaggaggcaaggga
gggcctggcccccgtggaccaaaaggagagcctggacgcaggggagatcctgggaccaag
ggcggcccgggcagtgatggtccaaagggggagaagggagaccctggtcctgaggggcca
cgaggtctggctggagaaatcggcagtaaaggagccaagggagacagaggtttgcctgga
cccagaggcccccagggagctcttggggagccagggaagcagggatctcggggagaccct
ggggatgctgggcctcgaggagattcaggacagccaggacccaagggagatcctggaagg
cctggattcagctacccaggaccccgagggacacccggtgaaaaaggcgagcccggccca
ccaggccctgagggaggccgaggagactttggtctgaaaggagcacccggacggaaggga
gaaaaaggagagccagctgatcctggtccccctggtgaacctggccctcgggggccaaga
ggaatcccaggacctgagggagaacccggccctccaggagatcctggtctcacggaatgt
gacgtcatgacctatgtgagggagacctgtgggtgctgtgactgtgagaagcgctgcggt
gccctggatgtggtcttcgtcatcgacagctctgagagtattggctacaccaacttcacc
ttggagaagaactttgtcatcaatgtggtcaacaggctgggcgccattgccaaggacccc
aagtctgaaacgggtacacgtgtgggtgtggtacagtacagccatgagggcacctttgag
gccatccggctggacgacgagcgggtcaactccctgtccagtttcaaggaggccgtcaaa
aaccttgagtggattgccggcggcacttggacgccctctgccctcaagttcgcctataat
cagctcatcaaagagagccggcgccagaagacccgggtgttcgcagtggtcatcacagat
gggcgccatgaccctcgagatgatgacctcaatcttcgggcactgtgtgaccgagacgtc
accgtgacagccatcggcatcggtgacatgttccacgagacccacgagagcgagaacctc
tactccatcgcctgtgacaagccccagcaggtgcgcaacatgacgctgttctctgacctg
gtggccgagaaattcatcgatgacatggaagacgtcctttgtccggacccccagatcgtg
tgtccagaacttccctgccaaacagagctctatgtggcccagtgcacacaacggcccgtg
gacattgtcttcctgctggatggctcggagcggctgggcgagcagaacttctacaaggca
cggcgcttcgtggaggaggtgtcacggcgcctgactctggcacgaagggatgacgaccca
ctcaatgcccgcatggccctgttgcagtatggaagccagaaccagcaacaggtggccttc
ccgttgacctacaatgtgaccaccatccacgaggccctggagagaaccacctacctcaat
tctttctcgcacgtgggcacaggcatcgtgcacgccatcaacaacgtggtgcggggggca
cggggtggggcccggcgtcacgcggagctgtccttcgtcttcctcacggacggcgtcacg
ggcaacgacagcctggaggagtccgtacactccatgcgtaagcagaatgtggtgcccacc
gtggtcgctgtgggtggtgatgtggacatggatgtacttaccaagatcagcctgggtgac
agggcggccatcttccgggagaaagacttcgacagtctagcccagcccagcttcttcgac
aggttcatccgctggatctgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (16)   
   RefSeq(nuc) (2)   
   GenBank (7)   
   EMBL (7)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system