KEGG   Rattus norvegicus (rat): 361825
Entry
361825            CDS       T01003                                 
Symbol
Smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno03250  Viral life cycle - HIV-1
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    361825 (Smarcb1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    361825 (Smarcb1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    361825 (Smarcb1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    361825 (Smarcb1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    361825 (Smarcb1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    361825 (Smarcb1)
   03036 Chromosome and associated proteins [BR:rno03036]
    361825 (Smarcb1)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     361825 (Smarcb1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     361825 (Smarcb1)
    SWI/SNF complex
     361825 (Smarcb1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    361825 (Smarcb1)
   PBAF complex
    361825 (Smarcb1)
   SWI/SNF complex
    361825 (Smarcb1)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 361825
NCBI-ProteinID: NP_001020899
RGD: 1308761
Ensembl: ENSRNOG00000028302
UniProt: Q4KLI0
Position
20:12740105..12763054
AA seq 376 aa
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS
QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI
RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP
TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT
TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD
RNTRRMRRLANTAPAW
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactacctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatgaccatggatacaccaccctggccaccagcgtgacg
ctactgaaagcctcagaggtggaagagattctggacggcaatgacgagaagtacaaggct
gtgtccatcagcacagagcccccaacctacctcagggaacagaaggccaagagaaacagc
cagtgggtccccaccctgcccaacagctcccaccatctggacgctgtgccgtgctccacc
accatcaataggaatcgcatgggtcgggacaagaagagaaccttccccttgtgctttgat
gaccacgacccagctgtgatccatgagaatgcatctcagcccgaggtactggtccccatt
cggctggacatggagatcgacgggcagaagctgcgagacgcttttacctggaacatgaat
gagaagctaatgaccccagagatgttttcagaaatactttgtgatgacctggacttgaat
ccactgacttttgtgccagctattgcctctgccattcgacagcagatcgagtcctacccc
acagacagcatcctggaggaccaatctgaccagcgtgtcatcatcaagctgaacatccat
gtggggaacatctccctggtggaccagtttgaatgggacatgtcagagaaagagaactcc
ccagagaagtttgccctgaagctgtgctcagagctgggcttgggcggggagtttgtcacc
accattgcgtacagcatccgaggacagctgagctggcaccagaagacctatgccttcagt
gagaacccacttcccacagtggagattgccatccgaaatactggagatgctgaccagtgg
tgccccctgctggagacactgacggatgctgagatggagaagaagatccgggatcaagac
aggaacacaaggcgaatgaggcgtcttgccaacactgccccagcctggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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