KEGG   Rattus norvegicus (rat): 361848
Entry
361848            CDS       T01003                                 
Symbol
Ddx50
Name
(RefSeq) ATP-dependent RNA helicase DDX50
  KO
K13183  ATP-dependent RNA helicase DDX50 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    361848 (Ddx50)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     361848 (Ddx50)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    361848 (Ddx50)
SSDB
Motif
Pfam: DEAD Helicase_C GUCT ResIII CMS1 ERCC3_RAD25_C AAA_30
Other DBs
NCBI-GeneID: 361848
NCBI-ProteinID: NP_001013216
RGD: 1310934
Ensembl: ENSRNOG00000000396
UniProt: A0A8I6AUH3
Position
20:complement(31104354..31133652)
AA seq 734 aa
MPGKLLWGDIMELEAPLEESESQRKERQKNDRRKSRHHSESEERTETRENGVTDDLDAPK
PKKAKTREKLNGDTKEGLRFSDEFSPSHKSRRKDLPNGDVDEYEKRSKRVSSSENSHKSS
DKADETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQART
GTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACF
YGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQ
VEDIIHESYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE
HLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIA
QSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG
RTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVD
FFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSC
AWKELNRKLSSNAVSQVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWILSVPAKLPE
IEEYYDGNTSSNPRQRSGWSGGRSGRSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGN
RNRSRSGGHKRSFD
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgcccgggaaactcctctggggagacatcatggagctcgaggcacccttggaagagtcc
gagagccagaggaaggagcggcaaaagaatgatagaaggaagtcaaggcaccattctgaa
tcagaggagagaacagaaacaagagaaaatggtgttacagatgacctggatgctcccaag
cccaaaaaagctaaaacgagagagaagctaaatggagacaccaaagaaggacttagattt
tcagatgaattttccccatctcataagtcaagaagaaaagacctgccaaatggagatgtg
gatgagtatgagaaaaggtctaaacgagtgtcatcctcagaaaactctcacaagtcaagt
gataaagcagatgagactctaacacgtgagcaaaaggaaggagccttctctaatttctcc
atttctgaggagaccataaagcttctgaaaggtcgaggggtaacatatctctttcctatt
caagttaaaacctttggccctgtctatgaaggaaaagacttaattgctcaagcccggaca
ggaacaggaaagacattctcttttgccatacccttgattgaaaggctccaaagaaatcaa
gaaacaattaaaaaaagccgctcaccaaaggtactcgttttggctccaacaagggaattg
gcaaatcaagtagccaaagatttcaaagatataactagaaaactcaatgtggcgtgtttt
tatggtggaacatcatatcaaagccagattaatcaaattcggaatggtattgacatcctt
gttgggaccccaggacgtatcaaagaccatctgcaaagcggccgtttggatctttcaaag
cttcgccatgttgtacttgatgaagtagatcaaatgttagatttaggttttgctgaacaa
gttgaagatattattcatgaatcctataaatctgattcagaagacaatcctcagacctta
cttttttctgcaacttgcccacagtgggtatacaaagttgcaaaaaaatacatgaaatcc
agatatgaacaggttgaccttgttggaaaaatgactcaaaaagctgcaaccactgtggaa
catttggctatccagtgccactggtcccagagaccagcagttattggagatgtccttcag
gtctacagtggatctgaagggagagctattatcttctgtgagactaagaagaatgttact
gaaatggccatgaatccacacataaagcagaacgcacagtgtttgcatggagatattgca
cagtcacaaagagaaattaccttgaaaggcttcagagaaggtagttttaaagttttggtg
gcaaccaatgtggctgctcgtggcttggacattcctgaagttgatcttgtgattcagagt
tctcctccacaggatgttgaatcctatatccatcgctctggacgcacaggtagagctggc
cggacaggaatttgtgtatgtttttatcaaccaagggaaagaggtcaactgagatatgtg
gaacagaaagcaggaattacttttaaacgtgtaggtgttccttctacaatggatttagtt
aaatctaaaagcatggatgccatcaggtctctggcttctgtttcttatgctgctgttgat
tttttccgaccatcagctcaaagactgatagaagagaagggggcagtggatgcattggct
gcagccttagctcacatttctggtgcatcaagctttgaaccccgatctttgatcacctct
gataaggggtttgtgaccatgactctggaaagcccagaagaaatacaggatgtcagctgt
gcttggaaggaacttaatagaaagctcagtagtaatgctgtgtctcaagtaaccagaatg
tgcctcctgaaaggaaatatgggtgtttgctttgatgttcctacaagtgagtcagaaaga
ttacaggcagagtggcatgactcagactggatactctcagtgccagccaagttacctgaa
attgaagaatattatgatggaaacacatcttctaatcccagacagaggagcggctggtct
ggcggcaggtcaggccgttcaggccgatctggtggtcgatctggtggccgatcaggtaga
cagagtcgacaggggagtcgttcaggaagtcggcaagacggtagaagacgaagtgggaac
agaaatcgatcaagaagtgggggccataaacggagttttgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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