KEGG   Rattus norvegicus (rat): 361935
Entry
361935            CDS       T01003                                 
Symbol
Afg2a
Name
(RefSeq) ribosome biogenesis protein SPATA5
  KO
K14575  AAA family ATPase
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    361935 (Afg2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    361935 (Afg2a)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    361935 (Afg2a)
SSDB
Motif
Pfam: AAA AAA_lid_3 RuvB_N AAA_16 AAA_5 TIP49 AAA_22 Mg_chelatase AAA_28 AAA_33 AAA_25 AAA_2 nSTAND3 RNA_helicase Parvo_NS1 Rad17 IstB_IS21 AAA_14 AAA_7 AAA_18 AAA_3 AAA_17 bpMoxR TsaE ATPase CDC48_N AAA_24 DUF5906 AAA_19 G3P_antiterm AAA_6
Other DBs
NCBI-GeneID: 361935
NCBI-ProteinID: NP_001402011
RGD: 1310478
Ensembl: ENSRNOG00000017462
UniProt: A6II14 D4A6T1
Position
2:122234619..122425808
AA seq 893 aa
MSSKKNRKRQKEGAEGTSPSLSAASSRSGTSTPLAQPNVAAPGMLVVTNFLEKVDGKVPK
TFQNSLVHLGLNTMKSANICIGRPVLLTSLDGKQEVYTAWPVAGFPGGKVGLSEMAQKNV
GVKAGETIRVQPLLGAVLQAQEMDLALSDKDKEINEEELTGCILRKLDGKIVLPGNFLYC
TFYGRLCKLQVLQVKGTDGTTLGKPQSSSGTDVHGMASEQSSMESSDVDISFQLSQLDLK
EPQSPASQSTPCKPINDRTMNKAGEVLLDVTQSPRDGSGLGLEEITGLKCSFDSSKEGNT
QPISEEKLLKSTSAGAKNNTDTFYFISSTTRINLRKICTNSKEQDSQFKVTYDMIGGLNS
QLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVING
PEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTL
MDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRV
PHLLTKAELLRLANNAHGYVGADLKALCNEAGLYALRRVLRKQPNLPDSKVAGMVKITLN
DFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFSRMGIQP
PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREVFRKARAVA
PSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDK
ALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC
KEAALLALEENIKADCIMKRHFTQALSIVTPRIPESLRRFYEDYQEKSGLHMV
NT seq 2682 nt   +upstreamnt  +downstreamnt
atgtcttccaagaagaacagaaagcgacagaaagagggcgcggaggggacctcgccctcg
ctctctgcggcttcgtctcgctcggggacctcgactcctctcgctcagccgaacgtggcg
gcgccggggatgttggtggtgaccaactttcttgagaaagtagatggcaaagttcctaag
acattccagaattccctagttcatcttggacttaacactatgaagtctgcaaacatatgt
ataggtcgaccagtgctccttaccagtttggatggaaagcaggaggtttatacagcctgg
ccagttgcaggatttcctggaggcaaggttggtctaagtgaaatggcacagaagaatgtg
ggtgtgaaagctggtgagaccatccgggtccaacctcttttgggtgctgtacttcaggcc
caggaaatggacttggcactgagtgacaaagataaggaaattaatgaagaagaactgact
ggttgtattctgagaaaactagatggcaagattgttttaccaggcaactttctgtactgt
acattctatggacgactctgcaagttacaagtgttgcaagtaaaagggacagatggcaca
acattgggaaagcctcagagctcctctggcactgatgtccatggaatggcctctgagcag
tctagcatggaaagcagtgatgtggatatttcattccagctaagccagttagatctgaaa
gaacctcagagcccagcatcacagagtactccctgtaaacccatcaatgacagaactatg
aataaagctggtgaagttttgttggatgttacacagagccctagggatggaagtggactt
ggactagaggaaatcacagggcttaagtgtagttttgattcatccaaagaaggaaataca
caacctatcagtgaagagaaactactaaaatctactagtgcaggtgcaaagaacaatact
gatactttttattttatttcttcaacaacaagaatcaatcttcgaaaaatttgtacaaat
tcaaaagaacaagacagtcagttcaaagtaacttatgacatgattggaggcttaaacagt
cagctgaaagcaataagagaaataattgaactgcctctcaagcagcctgaacttttcaag
agttacggaattccagcacctagagggttattactctatggtcctccaggtaccggaaag
acaatgattgctagggctgttgctaatgaagttggagcttatgtttctgtaattaatggt
cctgaaattataagcaaattctatggtgagactgaagcaaggttacgccagatatttgct
gaagccactctacggcatccatcgattatttttattgatgagctggatgcactttgccct
aaaagagaaggagctcaaagtgaagtggaaaagagagttgtagcttcgctcttaacattg
atggatggcattggctcagaaggaagtgaaggacgggtattagtccttggggccacaaat
cgccctcaagcgctagatgctgcactcagaagacctgggcgatttgataaagagattgag
attggcattcctaatgcccaagaccggcttgatattctccagaaactactccgaagggtg
ccacacttactcaccaaagctgagcttctgagattggcaaataatgcccatggttatgtt
ggcgcagacttgaaagccttgtgtaatgaagcaggtctgtatgccttgcgaagagtcctg
aggaaacagcctaatctccctgatagcaaggtggctggcatggtgaagattaccctaaat
gatttcttacaggggatgaatgatatcaggcctagtgctatgagagaggtagcaattgat
gtcccaaatgtatcctggtcagatattggaggactggaaaatatcaaactgaaattgaaa
caggctgtggaatggcccttgaaacatcctaagtctttcagcagaatgggtattcagcca
cctaaaggagttctcttgtatgggcctcctggatgctcaaaaacaatgatagcaaaggct
ttggccaatgaaagtgggttgaactttctagctataaaggggcctgaattaatgaataag
tatgttggtgaatctgaaagagcagttagagaggtattccgtaaagcaagagcagtggca
ccttccattatcttttttgatgaacttgatgccttggctgttgaaaggggcagttcttca
ggtgccgggaatgttgcagatcgtgttttggctcagctgttaacggaaatggatggaatt
gaacagctaaaaaatgtgacagttttggcagctactaatcgcccagatagaatagacaag
gctctgatgaggcctggaagaattgacaggatcatttatgtgcccttaccggatgcagca
acaagaagggaaatactgaacttgcagttccactcaatgccaatcagtaacgaggttgac
ctggatgaactggtcctccaaactgacacctactcaggagcagagatcatagcagtctgc
aaggaggccgctctcctagctctggaagaaaacattaaagctgactgcattatgaagagg
catttcactcaagccttgagcattgtgacacccagaatcccggagtcactgaggcgcttt
tatgaagattaccaagagaagagtgggttacacatggtctaa

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