KEGG   Rattus norvegicus (rat): 362199
Entry
362199            CDS       T01003                                 
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04140  Autophagy - animal
rno04148  Efferocytosis
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    362199 (Vps39)
   04148 Efferocytosis
    362199 (Vps39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    362199 (Vps39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    362199 (Vps39)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    362199 (Vps39)
SSDB
Motif
Pfam: Vps39_2 Vps39_1 CNH Clathrin Lgl_C KCTD11_21_C EcoR124_C
Other DBs
NCBI-GeneID: 362199
NCBI-ProteinID: NP_001012186
RGD: 1304858
Ensembl: ENSRNOG00000008316
Position
3:complement(127721076..127758658)
AA seq 875 aa
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
AKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKQKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSIWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALAIPYLEHIIHVW
EETGTRFHNCLIQLYCEKVQNLMKDYLLSLPTGKSPVPAGEEAGELGESRQKLLTFLEIS
SSYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNK
EGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgcatgacgcttttgagccggtgccgatcctggagaagcttccactgcagattgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaagcaagggcatcttcttctctac
aggattcggaaggatgttggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacttactgacatttcaacaaatcactacagtt
tcaaaggctaaaggagcatcactgttcacctgtgacctccagcacactgagacgggtgag
gaggtgttgcggatgtgtgtggcggtgaggaagaagctgcagttgtacttctggaaggat
agagaattccatgaactgcagggagactttagtgtacccgatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgttggcttcaagagagactactacctgattagggtggat
gcaaaggggtctatcaaagagctcttcccaacaggaaagcagctggagcccttagttgcc
cctctggcagatggaaaagtagccgtgggtcaggatgatctgactgtggtgctcaacgag
gaaggcatctgcactcagaaatgcgccctgaactggacagacatcccggtggccatggag
caccagcctccgtacattgtcgcagtgttgccaagatacgtggagatccgaacacttgaa
ccaaggcttctggtccagagcatagagttgcaaaggccccgcttcattacatcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagctagcg
gaaatgaaagatgactcagacagtgaaaagcagcagcaaatccatcacattaagaacttg
tatgccttcaacctcttctgtcagaagcgctttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccacgtgatgggcttgtaccccgacctgctgcccacggactac
aggaagcaactgcagtaccccaacccgctgcccacactctctggtgctgagctggagaag
gctcacttagcgctcattgactacctgacacagaagcggagccagttggtaaagaagctg
aatgactcggaccaccagtccagcacctccccactcatggagggcactcccaccatcaag
tccaagcagaagctgctgcagatcatcgacaccactctactcaagtgctacctccataca
aatgtggccctggtggctcccttgctgcgcctggagaacaaccactgtcacatcgaggag
agtgagcatgtgctgaagaaggctcacaagtacagtgagctgatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctagtggaccagtccaagaaagcaaactca
cctctgaaaggccatgaaaggacggtgcagtacctacagcatttgggcacagaaaaccta
catttgattttttcctactcgatctgggtgctgagagacttcccagaagatggcctgaag
atattcactgaagacctcccggaggtggagtctctgccacgagatcgcgtgctcaacttc
ttgatagagaatttcaaggccctggccattccttacctggagcacatcatccacgtgtgg
gaggagacaggcacacggttccacaattgcctaatccagctgtactgtgagaaagtgcag
aatctgatgaaagactacctcctgtcactacccacaggcaaaagtccagtccctgctggc
gaggaagcaggagaactgggagaatcccgacagaagctgctcacgttcctggagatttcc
agctcctacgatcccggccggctcatctgtgattttcccttcgatggcctcttagaagaa
agagctctcctgttgggacgcatggggaagcacgaacaagctctcttcatctatgtccat
gtcttgaaggacacaaagatggctaaggagtactgccacaaacactacgaccaaaacaaa
gaaggcaacaaagatgtatatctgtccctgcttcggatgtacctgtcgcctccaagcatt
cactgcctggggccaatcaaactagagctcctggagccacaggccaacctccaggctgcc
ctgcaggtcctagagctgcactacagcaaattagacaccaccaaggcaatcaaccttctg
ccagcaaacactcagatcaatgacatacgaatcttcctagaaaaggtcttagaagaaaat
gcacaaaagaaacggttcaatcaagtgcttaagaatcttctccatgcggagtttctcagg
gttcaggaagagcggattttacaccagcaggtgaagtgcatcatcactgaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gttgtgcactacttctgctccaaagaagttaactcagccgacacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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