KEGG   Rattus norvegicus (rat): 362229
Entry
362229            CDS       T01003                                 
Symbol
Xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03008  Ribosome biogenesis in eukaryotes
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    362229 (Xrn2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    362229 (Xrn2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    362229 (Xrn2)
   03019 Messenger RNA biogenesis [BR:rno03019]
    362229 (Xrn2)
   03009 Ribosome biogenesis [BR:rno03009]
    362229 (Xrn2)
   03016 Transfer RNA biogenesis [BR:rno03016]
    362229 (Xrn2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     362229 (Xrn2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     362229 (Xrn2)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    362229 (Xrn2)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    362229 (Xrn2)
SSDB
Motif
Pfam: XRN_M XRN_N
Other DBs
NCBI-GeneID: 362229
NCBI-ProteinID: NP_001102066
RGD: 1310218
Ensembl: ENSRNOG00000011785
Position
3:154888558..154962519
AA seq 951 aa
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPYALGSRNSPGCQVASNPRQAAYEMRMQSNSSPSISPNTSF
ASDGSPSPLGGLKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMG
VFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGSDVLFVGKVHPLHDFILELYQTGSTEPVDVPPELCHGIQG
KFSLDEEAILPDQTVCSPVPMLRDLTQNTAISINFKDPQFAEDYVFKAIMLPGARKPAAV
LKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVIPRGSGTGVYSNTAPPPAN
YQGNVYRPLLRGQAQIPKLMSNMRPQDNWRGPPPLFQQQRFDRSVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDHRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq 2856 nt   +upstreamnt  +downstreamnt
atgggagtcccggcgttcttccgctggctcagccgcaagtacccgtccatcattgtcaat
tgcgtggaggagaagccaaaagaatgcaatggtgtgaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgca
atttttgagtacattgacagacttttcaatattgtaagaccaagaagacttctctatatg
gcaatagatggagtggcaccacgtgccaaaatgaaccagcagcgttcaaggaggttcaga
gcatctaaggaaggaatggaagccgcagttgagaagcagcgagtcagagaggaaatactt
gcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccccgggtggaaaaatttgacagttatattatctgacgctagtgcg
cctggtgaaggagaacacaaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaatactcatcattgtttatgtggagctgatgctgatctcattatgcttggt
cttgctacacatgaacctaacttcaccataatcagagaagaattcaaaccaaataaacct
aaaccatgtgctctttgtaatcagtttggacacgaggtcaaggactgtgaaggtttgccc
agagaaaagaaggggaagcatgatgaacttgcagatagtcttccttgtgcagaaggggag
ttcatcttccttcggctgaatgtccttcgagagtatctggaacgagagctcaccatggcc
agcttaccgttcccatttgatgtggagaggagcatcgatgactgggtgttcatgtgcttc
tttgtggggaatgatttccttcctcacttgccgtcactagagattagggaaggtgcaatt
gatcgtttggttaacatatacaaaaacgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctacaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaagatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagaggatgaagagagatcaaccagcttttactcctagtggaatattaacacct
tacgctttgggttcaagaaattctccaggttgtcaagtagccagtaatccaagacaagcc
gcctatgaaatgaggatgcagagtaactctagtccttcaatatcccctaatacaagtttt
gcatctgatggctccccatctccactaggaggacttaagagaaaagcagaagatagtgat
agtgagccagagccagaggataacgtcaggttatgggaagctggttggaagcagcgatac
tacaagaacaaatttgatgtagatgcagctgatgagaaattccgacgtaaggttgttcag
tcttatgttgaaggattgtgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattacccattccattatgcgccgtttgcctcagactttgaaggtattgcagac
atgccttctgaatttgaaaagggcacaaaaccgtttaaaccactggaacagctaatgggg
gtttttccagctgcaagtggtaactttttacctccaacatggcggaagctcatgagtgac
cctgattctagtataattgacttctatcctgaagactttgctattgatttgaatgggaag
aagtatgcatggcaaggtgttgctctgttgccatttgtggatgagcgaaggctgcgagcg
gccctagaagaggtgtacccagacctcactccagaagagaacaggagaaatagtcttgga
agtgatgttttgtttgtgggaaaagttcatccactacacgacttcattttagagctgtat
cagacaggttctacagagccagtagatgtgccgcctgagttgtgtcacgggattcaaggg
aagttttctttggatgaagaagccatacttccagaccaaacagtatgttcccctgtgccc
atgttacgggacttgacacagaacactgcaatcagtattaattttaaagatccacagttt
gcggaagattatgtttttaaagctataatgcttccaggagcaagaaagccagcagcagtt
ctgaaacccggagactgggaaaaatccagcaatgggcggcaatggaaaccccagcttggc
tttaaccgggaccggcggcctgttcacctggaccaggcagcctttagaactttaggccat
gttataccaagaggctcagggactggtgtttacagcaacactgcacccccacctgccaat
taccaggggaacgtatacaggccactgctgagaggtcaagctcagatcccaaaactaatg
tcaaatatgaggccccaagataactggcgaggtcctcctcctcttttccagcagcagaga
tttgacagaagtgttggagctgaacccctactgccgtggaaccgaatgctccaaacccaa
aatgcagcctttcagccaaatcagtaccagatgctggctgggcccggaggatatccaccc
agacgtgatgaccatcgaggagggcgacagggatatcccagagaaggaaggaagtaccct
ttgccaccgccctcgggaagatacagttggaattag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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