KEGG   Rattus norvegicus (rat): 362609
Entry
362609            CDS       T01003                                 
Symbol
Pum1
Name
(RefSeq) pumilio homolog 1
  KO
K17943  pumilio RNA-binding family
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05017  Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    362609 (Pum1)
SSDB
Motif
Pfam: PUF
Other DBs
NCBI-GeneID: 362609
NCBI-ProteinID: NP_001102154
RGD: 1307190
Ensembl: ENSRNOG00000011709
UniProt: A6ISP6
Position
5:148120712..148238468
AA seq 1189 aa
MSVACVLKRKAVLWQDSFSPHLKHHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT
HSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNTSKHRWPTGDNIHAEH
QVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTS
DHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGDSCLRKGGF
GPRDADSDENDKGEKKNKGAFDGDKLGDLKEEGDVMDKTNGLPVQNGIDADVKDFSRTPG
NCQSSANEVDLLGPNQNGSEGLAQLTSTNGAKPVEDFSNMESQSVPLDPMEHVGMEPLQF
DYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHIAGL
APAAFVPNPYIISAAPPGTDPYTAGLAAAATLGPAVVPHQYYGVTPWGVYPASLFQQQAA
AAAAATNSATQQSAPQAQQGQQQVLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAF
GQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVA
AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSS
LFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR
TSSSLAPIGHSFYNSLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTN
GSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNN
RYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGN
YVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVREL
DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHC
LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF
ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR
KIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLGPICGPPNGII
NT seq 3570 nt   +upstreamnt  +downstreamnt
atgagcgttgcatgtgtcttgaagagaaaagcagtgctttggcaggactctttcagcccc
cacctgaaacatcaccctcaagaaccagctaatcccaacatgcctgttgttttgacatct
ggaacagggtcgcaagcgcagccacagccagctgcaaatcaggctcttgcagctgggaca
cactccagccctgtcccaggatccataggagttgcaggccgttcccaggacgacgctatg
gtggactacttctttcagaggcagcatggtgagcagcttgggggaggaggaagtggtgga
ggcggctataatactagcaaacatcgatggcctacaggggataacattcatgcagaacac
caggtgcgctctatggatgaattaaatcatgattttcaagcacttgctctggaagggaga
gctatgggcgagcagctcttgccaggtaaaaagttttgggaaacagatgaatccagcaaa
gatggaccaaaaggaatattcctgggtgatcaatggcgagacagtgcctggggaacatca
gatcattcagtttcccagccaatcatggtgcagagaagacctggtcagagtttccatgtg
aacagtgaggtcaattctgtactgtccccacgatcggagagtgggggactaggcgttagc
atggtggagtatgtgttgagctcatccccgggcgattcctgtctaagaaaaggaggattt
ggcccaagggatgcagacagtgatgaaaacgacaaaggtgaaaagaagaacaagggtgcg
tttgatggagataagctaggagatttgaaggaggagggagatgtgatggacaagaccaat
ggtttgccagtgcagaatgggattgatgcagacgtcaaagattttagccgtacccctggt
aattgccagagctctgctaatgaagtggatcttctgggtccaaaccagaatggttctgag
ggcttagcccagctgaccagcaccaatggtgccaagcctgtggaggatttctccaacatg
gagtcccagagtgtccccttggaccccatggaacatgtgggcatggagcctctgcagttt
gattattcaggcacgcaggtacctgtggactcagcagcagcaacagtgggactttttgac
tacaattctcaacaacagctattccaaagacccaatgcgcttgctgttcagcagttgaca
gctgcccagcagcagcaatatgcacttgcagcagcccaccagcctcacatcgcaggttta
gctcccgctgcgtttgtccccaacccatacatcatcagcgctgctcccccagggacggac
ccctacacagctggattggctgcagcagcgacactcggcccagctgtggtccctcaccaa
tattatggagtcacgccatggggtgtctatcctgctagtcttttccagcaacaagctgct
gcagctgcagcagcaacaaattcagctactcagcagagtgccccacaggcccagcaggga
cagcagcaggttcttcgtggaggagctagccagcgtcctttgaccccaaatcagaaccag
cagggacaacaaacagatccccttgtagcagctgcagcagtgaactctgctcttgccttt
ggacaaggattggctgcaggtatgccaggttatccagtcttggcacctgctgcttactat
gaccaaactggtgcccttgtggtgaatgcaggggcaagaaatggcctcggagctccagtt
cggcttgttgctccagccccagtcatcattagctcctcagctgcacaagcagctgttgca
gcggctgcagcttcagcaaatggagcagccggtggtcttgcaggaactacaaatggacca
tttcgacctttaggcacccagcagccccagccccagccccagcagcagcccagtaacaat
ctggcttccagctctttctatggcaacaactctctgagcagtaactcccagagcagctcc
ctcttctctcagggctccgcccagcctgccaacacgtccttgggattcggaagcagcagt
tcccttggtgccaccctaggatcggcccttggagggtttggaacagcagttgcaaactcc
aacactggcagtggctcccgccgtgactccctgactggcagcagtgacctttataagagg
acatcgagcagcttggcccccattggacacagtttttataacagccttagcttttcctcc
tctcctggacccgtgggcatgcctctccctagtcagggaccaggacattcacagacacca
cctccttccctctcttcacatggatcctcttcaagcttaaacctgggaggactcacgaac
ggcagtggaagatacatctctgctgctcctggtgccgaagccaagtaccgcagtgcgagc
agtgcctccagccttttcagccccagcagcacccttttttcttcctctcgtttgagatac
ggaatgtctgatgttatgccctctggcaggagcagacttctggaagactttcgaaacaac
cggtaccctaatttacaactgcgggagattgccgggcatataatggaattttcccaagac
cagcatggttctagattcattcagctgaaactagagcgagccacagcagctgagcgccag
cttgtcttcaacgaaatcctgcaggctgcgtaccaacttatggtggatgtgtttggaaat
tacgtcattcagaagttctttgaatttggcagccatgaacagaagctggctttggctgaa
cggattcgaggccacgtcctatcattggcactgcagatgtatggctgccgagtcatccag
aaagctttggaatttattccctcagaccagcaggtaattaacgagatggtgcgggagcta
gatggccatgtcctgaagtgtgtgaaagaccagaatggcaaccatgtggttcagaagtgc
attgaatgtgtacagccccagtctttgcagttcatcatcgatgcattcaaggggcaggtg
tttgctttgtctacgcacccatatggctgtagggtgatccagaggatcctggaacactgt
ctccccgaccagaccctccctatcctggaggagcttcaccagcacacggagcagctcgtg
caggatcagtatggaaattatgtaatccaacatgtcctggagcatggtcgtcctgaggat
aaaagcaaaattgtagcagagatccgaggcaatgtacttgtattgagtcagcacaaattc
gcaagcaatgttgtggagaagtgtgtcactcacgcctcacgtacagagcgtgctgtgctc
attgatgaggtatgcaccatgaatgacggtccccacagtgccttatacaccatgatgaag
gatcagtatgccaattatgtggtccagaagatgatcgatgtggctgagccggggcagcgg
aagattgtcatgcacaagatccggccacacatcgcgactcttcggaagtacacctatggc
aagcacatcctggccaagcttgagaagtactacatgaagaatggtgtggacttggggccc
atttgtggtccccctaatgggatcatctga

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (51)   
   UniProt (1)   
   RefSeq(pep) (50)   
DNA sequence (50)   
   RefSeq(nuc) (50)   
Protein domain (1)   
   Pfam (1)   
All databases (111)   

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