KEGG   Rattus norvegicus (rat): 362708
Entry
362708            CDS       T01003                                 
Symbol
Trim54
Name
(RefSeq) tripartite motif-containing protein 54
  KO
K10653  tripartite motif-containing protein 54
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    362708 (Trim54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    362708 (Trim54)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    362708 (Trim54)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4_2 zf-C3HC4 zf-B_box zf-RING_5 zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-RING_6 UvrD_C Sina_RING PHP DUF5799 DUF1421 SpoIISA_toxin FlgN DUF349 zf-RING_11
Other DBs
NCBI-GeneID: 362708
NCBI-ProteinID: NP_001013235
RGD: 1306453
Ensembl: ENSRNOG00000006146
UniProt: Q5XIH6 A6HA76
Position
6:complement(30959306..30978475)
AA seq 364 aa
MNFTVGFKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQKFETLCAVLEERKGELLQALARVQE
EKLQRVRSLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAG
RPEPGYESMEQFSVIVEHVAEMLRTIDFQPGASGDEEDDEVTLDGEEGNTGLEEERLDGP
EGLH
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgaacttcacggtgggtttcaagccgctgctgggggatgcacacaacatggacaacctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtgatcttg
ccgtgccaacacaacctgtgccgcaagtgtgccaacgacgtcttccaggcctctaaccct
ctgtggcaatcccggggctccacaactgtgtcttcaggaggacgtttccgctgcccatct
tgtaggcacgaggttgtcctggaccggcatggcgtctacggcctgcagcggaacctgcta
gtggagaatattattgacatctacaaacaggagtcctcccggccactgcactccaaggct
gaacagcaccttatgtgtgaggaacatgaagacgagaagattaacatctactgtctgagc
tgtgaggtgcccacctgctctctctgcaaggtctttggcgcccacaaggactgtgaggtg
gcccctctgcccaccatttacaaacgccagaagagtgagctgagtgacggcatcgcgatg
ctggtggcaggcaacgaccgtgtgcaggcagtgatcacgcagatggaggaggtgtgccag
accattgaggacaacagccgcagacagaaacaactgttaaaccagaagttcgagaccctg
tgcgcggttttggaggagcgcaagggcgagttgcttcaagcgctggctcgggtgcaagag
gagaagctgcagcgcgtgcgtagcctcatccgccagtacggagaccacttggaggcctcc
tctaagctggtggagtccgccatccagtccatggaggagccgcagatggctctctacctc
cagcaggccaaggagctgatcaacaaggtcggggcaatgtcgaaggtggagctggctgga
cggccggagccaggctatgagagcatggagcaattctctgtgatcgtggagcacgtggcg
gaaatgttgcggaccatcgacttccagccgggcgcctctggggatgaagaggatgacgag
gtgactttggacggggaagagggcaacacagggctggaggaggagcggctggacgggcca
gaaggtttgcactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (35)   

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