KEGG   Rattus norvegicus (rat): 362855
Entry
362855            CDS       T01003                                 
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    362855 (Rtcb)
Enzymes [BR:rno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     362855 (Rtcb)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    362855 (Rtcb)
 Prokaryotic type
   tRNA splicing ligases
    362855 (Rtcb)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 362855
NCBI-ProteinID: NP_997497
RGD: 1303261
Ensembl: ENSRNOG00000004813
UniProt: Q6AYT3
Position
7:19795393..19814875
AA seq 505 aa
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagtcgtaactacaacgatgagctacagttcttggacaagatcaataagaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggggtgttttatgtgaatgac
gctctggaaaagctcatgtttgaggagttacggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaagcagattggcaatgtggcagccctgcctggaatagttcat
cggtctattgggcttcctgatgtccactcaggctacgggtttgccatagggaacatggct
gcctttgatatgaatgaccctgaggcagttgtatccccaggtggtgtcggatttgatatt
aactgtggtgtccgcttgctaagaaccaatttagatgagagcgatgtacagcctgtgaag
gaacaacttgcccaagctatgtttgaccacatccctgtcggggtgggatcgaaaggtgtc
attccaatgaatgccaaagacttggaggaggcattggagatgggtgtggactggtccctg
agagaaggctatgcctgggctgaggacaaggagcactgtgaggagtatggaaggatgctc
caagccgaccccaataaggtctcacccagggcaaagaaaaggggccttcctcagttgggg
accctgggagcaggcaaccattatgcagagatccaggttgtagatgagattttcaacgag
tatgctgccaagaagatgggcatcgaccataagggacaggtgtgcgtgatgatccacagc
gggagcagaggcttgggccatcaagtagctacagacgcactggtagctatggagaaagcc
atgaagagagacaagattatagtcaatgaccggcagctggcgtgtgctcggattgcatcc
ccagagggacaagactatctaaagggaatggctgccgctggaaactatgcctgggttaac
cgctcgtctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gacgacctggacctgcatgtgatttatgatgtttctcacaacatcgccaaagtggagcag
cacgtggtagacggaaaggagcggacgctgttggtgcacaggaaagggtccacccgagct
ttccctcctcaccatcccctcattgctgttgattaccagctcactggacaaccagtgctt
atcggtggcaccatggggacctgtagttatgttctgactggcactgaacaaggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgctttgtccagagcaaaatcacgt
cgtaatttagatttccaagatgtcttagacaagctggcagacatgggaatcgccatccgg
gttgcgtcccccaagctggttatggaagaggctccagaatcatataagaatgtgacagac
gtcgtgaacacttgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgttattaaaggatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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