KEGG   Rattus norvegicus (rat): 363000
Entry
363000            CDS       T01003                                 
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B
  KO
K12821  pre-mRNA-processing factor 40
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    363000 (Prpf40b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    363000 (Prpf40b)
Spliceosome [BR:rno03041]
 Complex A
  U1 snRNP components
   U1 related factors
    363000 (Prpf40b)
 Complex B
    363000 (Prpf40b)
SSDB
Motif
Pfam: FF WW DUF4936 RhoGAP-FF1
Other DBs
NCBI-GeneID: 363000
NCBI-ProteinID: NP_001128055
RGD: 1565411
Ensembl: ENSRNOG00000052539
UniProt: A6KCE7
Position
7:132271469..132332913
AA seq 867 aa
MMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVP
PMMPGMLMPAVPVTAATAPGADTASSAVPGTGPPRALWSEHVAPDGRIYYYNADDKQSVW
EKPSALKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAG
KQQTQQLQTLQPQPPQPDPPPIPPGPIPVPMALLEPEPGRSEDCDVLEAAQPLEQGFLQR
EEGPSSSTGQHRLPQEEEEAKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAM
KMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTS
TTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILD
GMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERA
RLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLD
LFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKL
TFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSA
FEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGRKHHRKRSHTPSGSESDEEEL
PPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGPGSPSSHLLLGSDHGLRKTKKP
KKKTKKRRHKSTSPDSETDPEDKAGKESEDREQEQDREPRQAELPNRSPGFGIKKEKTGW
DTSESELSEGELERRRRTLLQQLDDHQ
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgatgccaccacccttcatgccccctccagggctcccacctccttttcctccgatgggg
ctcccccctatgagtcagagacctccagccatcccccccatgccacctggcatattgccc
ccaatgcttccaccaatgggggcaccgcctccacttacacagataccaggaatggtccct
ccgatgatgccggggatgctgatgccagccgtgcctgtcactgcagcgacggctccgggt
gcggacaccgccagctctgctgtgcctggcacaggccctccgagggccttatggagtgaa
cacgtggcccctgacgggcgcatctactactacaatgcagatgataagcaatccgtgtgg
gagaagcccagcgcactcaagtctaaagccgagctgctactgtcccagtgtccctggaaa
gagtataaatcagacacaggaaagccttactactacaacaaccagagtcaggagtcccgt
tggacccgacccaaggacctggatgacctggaagccctagtcaaacaagagtctgcagga
aaacagcagacccagcaactacagacactacagccacaaccacctcagcctgaccctcca
cctatacctccgggtcccatcccagtgcccatggccctcctggaacctgaaccaggtcga
agtgaagactgtgatgtgctggaggctgcccaacccttggagcagggcttcctgcagcgg
gaggagggccccagcagttctactggacagcatcggctaccacaggaagaggaggaagct
aagccagaaccagagagatcgggcctcagttggagcaaccgggagaaggcaaagcaggca
ttcaaagagctgctaagggacaaggctgtcccttccaatgcttcctgggaacaggccatg
aagatggtagtcactgacccacgttacagtgccttgcccaaactgagtgagaagaagcag
gcgtttaatgcttataaggctcagcgggagaaagaggagaaagaggaggcccggctgaga
gccaaggaggccaagcagactctgcagcatttcctggagcagcatgaacgcatgacctcc
accacccgctaccggcgggcagaacagacttttggggacctggaggtctgggctgtggtc
cctgagagggatagaaaagaagtttatgatgatgtcctcttcttcctggccaagaaggag
aaggaacaagccaagcagctccggcgtcgaaacatccaagccctgaagagcatcctggat
gggatgagtagtgtcaacttccaaaccacatggtcccaggcccagcagtacctcatggat
aaccccagctttgctcaggaccagcagctgcagaacatggacaaagaagatgcactcatc
tgctttgaggagcacatccgagctttggagagagaggaggaggaagagcgggaacgcgcc
cggcttcgggaacggcgccagcagcggaagaatcgggaggcttttcagaccttcctggac
gagctgcatgagacagggcagctgcactccatgtccacctggatggagctgtacccagca
gtcagcaccgatgttcgctttgccaacatgctgggccagccgggctcgactcctctggac
ttgttcaagttctatgtggaggagttgaaggctcggttccacgatgagaagaaaatcata
aaggatattcttaaggaccggggcttctgtgtggaggtgaacacagcctttgaggacttc
gcccacgtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctg
accttcaacagtctgctggaaaaagcagaggcacgggagagggaacgggaaaaggaggag
gcccgaaggatgcggcgcagagaagctgcctttcgaagcatgctgaggcaggccgtgcct
gctctggagctgggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagcc
tttgagcagatcaccctggagtcggagcggatccggctctttcgagagttcctgcaggtg
ctggagactgaatgccagcacctccacaccaaaggccgaaagcatggcagaaagggcagg
aaacaccatcgcaagcgttcgcacaccccctcaggctctgagtcagatgaagaggagctg
cccccaccatccctccggccccccaagcggaggcggcggaacccttcagaatctggctct
gagccttcctcctcacttgattcagttgaaagtgggggtgctgcccttggaggaccaggc
tccccatcttcccaccttcttcttgggtcagatcatggtcttcggaaaaccaagaaacca
aaaaagaaaactaagaaaagaagacacaagtcgaccagtccggacagtgagacggacccc
gaagacaaagccggtaaggagagtgaagacagagaacaggaacaggacagggaaccccgg
caggcagagctccctaaccgttccccaggcttcggaatcaagaaggagaagacaggctgg
gacacatcggaaagcgagctgagtgagggggagctggagaggcgaaggcggacactccta
caacagctggacgaccaccaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (21)   
   UniProt (1)   
   RefSeq(pep) (20)   
DNA sequence (21)   
   RefSeq(nuc) (21)   
Protein domain (4)   
   Pfam (4)   
All databases (56)   

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