KEGG   Rattus norvegicus (rat): 363002
Entry
363002            CDS       T01003                                 
Symbol
Smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    363002 (Smarcd1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    363002 (Smarcd1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    363002 (Smarcd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    363002 (Smarcd1)
   03036 Chromosome and associated proteins [BR:rno03036]
    363002 (Smarcd1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     363002 (Smarcd1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    363002 (Smarcd1)
   PBAF complex
    363002 (Smarcd1)
   GBAF(ncBAF) complex
    363002 (Smarcd1)
SSDB
Motif
Pfam: SWIB DivIC
Other DBs
NCBI-GeneID: 363002
NCBI-ProteinID: NP_001102222
RGD: 1305406
Ensembl: ENSRNOG00000061572
UniProt: A6KCH0
Position
7:132708627..132719167
AA seq 515 aa
MAARAGFQSVAPSGGAGASGGAGVAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq 1548 nt   +upstreamnt  +downstreamnt
atggcggcccgggcgggtttccagtccgtggctccgagcggcggcgcgggagcctcagga
ggagcgggcgtggcggctgctctgggcccgggcggaactcccgggcctcccgtgcgaatg
ggcccggcgccgggtcaagggctgtaccgctctccgatgcccggggcggcctatccgaga
ccaggtatgctgccaggcagccgaatgacacctcagggaccttccatgggacctcctggc
tatggggggaacccttcagtccgacctggcctggcccagtcagggatggaccaatcccgc
aagagacctgcacctcaacagatccagcaggtccagcagcaggcggtccaaaatcgaaat
cacaatgcaaagaaaaagaagatggctgacaaaatcctacctcagaggattcgggaattg
gtaccggaatcacaggcctacatggatctcctggcttttgaaaggaaactggaccagact
attatgaggaaacgcctggatatccaggaggccttgaagcggcccatcaagcaaaaacgg
aagctgcggattttcatttctaacacattcaatccggctaagtcggatgccgaggacggg
gaagggactgtggcttcctgggagctccgggtagaaggacggctcctggaggattcagcc
ttgtccaaatatgatgccaccaagcaaaagagaaagttctcttccttttttaagtccttg
gtgatcgaactggacaaagacctctatgggccagacaaccatctggtagaatggcacagg
accgccactacccaggagacagacggcttccaggtgaagcgaccaggagatgtgaatgta
cggtgcactgtcctgctgatgctggattaccagcccccccagtttaaattagaccctcgc
ctggctcgcctcttgggcatccacacccagacacgtccagtgatcatccaggcactgtgg
caatatattaaaacacataagctccaggaccctcacgagcgagagtttgttatctgtgac
aagtacctccagcagatctttgaatctcagcggatgaagttctcagagatccctcagcgg
ctgcatgccctgctcatgccaccagaacccatcatcattaatcacgtcatcagtgttgac
ccaaatgaccagaaaaagacagcgtgctacgacattgatgtggaagtggatgacactttg
aagacccagatgaactctttcctgctgtccactgccagccagcaggagatcgctactcta
gacaacaagatccatgagacaatagaaactatcaaccagctgaagacccaacgagagttc
atgctgagctttgcccgagaccctcagggtttcatcaatgattggcttcaatcccagtgc
cgggacctcaagacaatgactgatgtggtgggtaatccggaagaggagcgccgagctgag
ttctacttccagccttgggcccaggaggccgtgtgtcgatacttctactccaaggtgcag
cagaggcggcaagaattagagcaagccctgggaatccgaaacacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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