KEGG   Rattus norvegicus (rat): 363278
Entry
363278            CDS       T01003                                 
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1
  KO
K17890  autophagy-related protein 16-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04136  Autophagy - other
rno04140  Autophagy - animal
rno04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    363278 (Atg16l1)
   04136 Autophagy - other
    363278 (Atg16l1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    363278 (Atg16l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    363278 (Atg16l1)
   03029 Mitochondrial biogenesis [BR:rno03029]
    363278 (Atg16l1)
Membrane trafficking [BR:rno04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    363278 (Atg16l1)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    363278 (Atg16l1)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    363278 (Atg16l1)
SSDB
Motif
Pfam: ATG16 WD40 ANAPC4_WD40 NBCH_WD40 eIF2A Ge1_WD40 KASH_CCD TolB_like Fez1 APEH_N Img2
Other DBs
NCBI-GeneID: 363278
NCBI-ProteinID: NP_001102279
RGD: 1310631
Ensembl: ENSRNOG00000017913
UniProt: D3ZFK6
Position
9:95869839..95905354
AA seq 607 aa
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK
HDVPNRHEISPGHDGAWNDSQLQEMAQLKMKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEIQTNEAKIAECLQTISDLEADCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDVVDT
HPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKG
SLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
VVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRTNAIKQSFSAPGFKCGSDWTRV
VFSPDGSYVAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR
AVLWAQP
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcgtcgggcctccgcgccgcagactttccccgctggaagcgccacatcgcggaggaa
ctgaggcgccgggaccggctgcagaggcaggcgttcgaggagatcattctgcagtatacc
aagttgctggagaagtcagatcttcattcagtattgacccagaaactacaggctgaaaag
cacgacgtaccaaataggcatgaaataagtcctgggcacgatggtgcatggaatgacagt
cagctacaagaaatggcccagttgaagatgaaacaccaggaagagctgactgaactgcac
aagaagcgtggggagttagctcagttggtgattgacctgaataaccagatgcagcagaag
gacaaggagatacagacgaatgaagcaaagattgcagagtgtttacagaccatctctgac
ctggaggcagactgcctggacctgcgcaccaaactgcaggaccttgaggtagccaaccag
accctgaaggatgagtatgatgccctgcagattacttttactgccctagaagagaaactg
aggaaaactactgaggagaaccaggaactggtcaccaggtggatggctgagaaggcccaa
gaagccaatcgccttaatgcggagaatgagaaggactccaggaggcgacaagcacggttg
cagaaggagcttgcagaagcagcaaaggaacctctacctgtcgaacaggatgatgacatt
gaagtcattgtagatgagacctcagatcacacagaagagacctctcctgtgcgagccatc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccatcccagtcccccaagatgtcgtggacact
catcctgcttctggtaaagatgtgagagtcccaactactgcctcgtatgtctttgatgca
catgacggagaggtcaatgcagtacagttcagtccaggctcccggttactggccactgga
ggcatggaccgcagggttaaactttgggaagcattcggagataaatgtgaattcaagggc
tccctgtctggcagcaatgcgggaattacaagcattgaatttgatagtgctggagcttac
ctattagcagcttcaaatgattttgcaagccgaatctggactgtggatgattatcgatta
cggcacacacttaccggccacagcgggaaagttctctctgccaagttcctgctggacaat
gcacggatagtctcaggaagtcatgaccggaccctcaaactctgggatctccgcagcaaa
gtctgtatcaaaacagtgttcgcagggtccagctgcaatgacattgtttgcactgagcaa
tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatccggtcagagagt
gtggtccgagagatggaactgttagggaagatcactgctctggacttaaaccccgagagg
actgagctcctgagctgctcccgtgatgacctgctaaaaatcattgacctgcggacaaac
gccatcaagcagtcattcagtgcacctggattcaagtgtggctctgactggacccgagtt
gtcttcagccctgatggcagttacgtggcagcaggctcagctgacggctctctttatgta
tggagtgtgctcacggggaaagtagagaaggttctctccaagcagcacagctcttctatc
aatgcggtggcgtgggccccctctggcttacatgttgtcagtgtggacaaaggaagcaga
gctgtgctatgggcacagccttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (21)   
   RefSeq(nuc) (7)   
   GenBank (7)   
   EMBL (7)   
Protein domain (11)   
   Pfam (11)   
All databases (53)   

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