KEGG   Rattus norvegicus (rat): 364073
Entry
364073            CDS       T01003                                 
Symbol
Ddx3
Name
(RefSeq) DEAD-box helicase 3
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:3.6.4.13]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04622  RIG-I-like receptor signaling pathway
rno05161  Hepatitis B
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    364073 (Ddx3)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    364073 (Ddx3)
  09172 Infectious disease: viral
   05161 Hepatitis B
    364073 (Ddx3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    364073 (Ddx3)
   03041 Spliceosome [BR:rno03041]
    364073 (Ddx3)
   03036 Chromosome and associated proteins [BR:rno03036]
    364073 (Ddx3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     364073 (Ddx3)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     364073 (Ddx3)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    364073 (Ddx3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    364073 (Ddx3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 364073
NCBI-ProteinID: NP_001102328
RGD: 1309586
Ensembl: ENSRNOG00000002501
UniProt: D3ZN21 A6JGT0
Position
13:101051975..101055144
AA seq 659 aa
MSHVAEEDELGLDQQLAGLDLTSPDSQSGASTASKGRYIPPHLRNREATKASYDKDSSRW
SKDKDAYSSFGSRSDTRAKSSFFSDRGSGSRGRFDDRGRSDYEGVGSRGGRSGFGKFERG
GNSRWCDKADEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESF
SDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQI
YTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYG
GADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIR
RIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV
EEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE
ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT
SFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYR
QSSGASSSSFSSGRASNSRSGGGSHGSSRGFGGGSYGGFYNSDGYGGNYSSQGVDWWGN
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgagtcatgtggcagaggaagatgagcttgggctggaccagcagttggctggcctagac
ctgacgtctccagacagccagagcggggcaagcacagccagcaaagggcgctacatccct
cctcacctgcggaacagggaggctacgaaagcgtcctacgacaaagacagctcacggtgg
agtaaagacaaggatgcctacagcagctttggttcccgcagtgacacgagagccaagtcg
agtttcttcagcgaccgcggaagtggctccagaggaaggtttgatgaccgcgggcggagt
gactatgagggcgttggcagccgtggaggtagaagtggctttggcaaatttgagcggggc
gggaacagtcgctggtgtgacaaagcagacgaggatgactggtctaaaccactcccacca
agcgaacgcttggaacaggagctcttttctggaggcaatactgggattaactttgagaaa
tatgatgacattccagttgaagcgacagggaataactgccctccacatattgaaagtttc
agcgacgtcgagatgggagaaattattatgggaaacatcgagctcactcgttatacacgc
ccaactccggtacaaaagcatgctattcctattatcaaggagaaaagagacttgatggct
tgtgctcaaacagggtctggaaaaacggcagcttttcttctacctatcttgagtcagatc
tatacagatggtccaggtgaggctttgagggccatgaaggagaatggaaagtatgggcgt
cgcaaacagtatccgatctccttggttttggctccgaccagagaattggcagtgcagatc
tatgaggaggccaggaaattctcataccgatctcgagttcgaccttgtgtggtttatggt
ggagctgatattgggcagcagattcgagacttggaacgtggctgtcacttgttagtagct
actccaggacggctagtggacatgatggagagaggaaagatcggactggacttctgcaaa
tacttggtgttagacgaagcggatcgaatgttggacatgggctttgagcctcagatacga
agaatagttgaacaagacaccatgcctccaaaaggtgtccgtcacactatgatgtttagc
gctacttttcctaaggaaatacagatgctggctcgggatttcttggatgaatatatcttt
ctggccgtaggaagagtcggatctacttctgagaacatcacacagaaagttgtgtgggtg
gaagaagcagacaagcggtcatttctgcttgacctcctgaatgcgacaggcaaggattcc
ctgatattggtgttcgtggaaaccaaaaagggtgcagattctctggaggatttcttatac
catgaaggatatgcttgtaccagtattcatggagaccgatctcagcgagatagggaagag
gcccttcaccaattccgatcaggaaaaagtccaattctcgtggctacagcagtagcagca
agaggactggatatttccaatgtgaaacatgtcatcaatttcgacttgcctagtgacatc
gaagaatatgtgcatcgaattggccgtacaggtcgtgttggaaaccttggccttgccacc
tcattcttcaacgagaggaacataaatattaccaaagatttattggatcttcttgttgaa
gcaaaacaagaagtgccatcttggctagaaaacatggcttttgaacatcattacaagggt
ggcagtcgtggacggtccaagagcagatttagtggaggatttggtgctagagactatcga
caaagtagcggtgccagcagttccagcttcagcagtggccgtgctagcaacagtcgcagt
ggtggaggcagccatggcagcagcagagggtttggtggaggtagctatggaggcttttac
aatagtgatggatatggaggaaattatagctcccagggggttgactggtggggtaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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