KEGG   Rattus norvegicus (rat): 364624
Entry
364624            CDS       T01003                                 
Symbol
Lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    364624 (Lsm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    364624 (Lsm1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     364624 (Lsm1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     364624 (Lsm1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 364624
NCBI-ProteinID: NP_001102346
RGD: 1304967
Ensembl: ENSRNOG00000015375
UniProt: D3ZWB1 A6IW03
Position
16:complement(72980075..72991581)
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGRKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQSRLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactatatgcccggcaccgccagcctcatcgaggacatcgacaaaaagcacttggtc
ctacttcgagatggaaggacacttataggttttttaagaagcattgatcaatttgctaac
ctagtgctccatcagactgtggagcgaattcacgtgggcagaaagtacggtgatattcct
cgagggattttcgtggtcagaggagaaaatgtggtcctactaggagaaatagacttggaa
aaggaaagtgacacgccacttcagcaagtctccattgaagagatcctggaggaacagagg
gtagagcagcagagcaggctggaggcagagaagctgaaggtccaggcccttaaagaccgg
ggtctctccattcctcgtgcagacactctggatgagtactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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