KEGG   Rattus norvegicus (rat): 364841
Entry
364841            CDS       T01003                                 
Symbol
Pcdhb1
Name
(RefSeq) protocadherin beta-1 precursor
  KO
K16494  protocadherin beta
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    364841 (Pcdhb1)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   364841 (Pcdhb1)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_3 Ly49
Other DBs
NCBI-GeneID: 364841
NCBI-ProteinID: NP_001014800
RGD: 1308760
Ensembl: ENSRNOG00000020103
Position
18:29187848..29190759
AA seq 818 aa
MAAARRKPLQNRQVGSLLLLWCVSVGGAATIRYSVAEEMESGSFVANVAKDLGLEVGKLA
ERGARLVAEGNRLHFRLHRKTGDLFVKEKLDREALCGKADPCVLHFEIILAEPLQSFRVE
VRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANTYFHL
HTRFRSHGPKYAELVLDNPLDREAQPEVNLTITAVDGGSPPKSGTANIRVVVLDVNDHVP
QFSRLVYRAQVPENSDNGSLVVVVTATDLDEGTNKQITYSLAENPEAVLRTFLVDPQTGE
VRLRGPLDFETIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTISSVSSPLAEDS
PLQTVVALFTIRDRDVRVGGKITCFLKEDLPFVVKHTFRNSYSLVTDRILDREDVSNYNI
TLVAMDTGPPSLSTETVIEVVISDINDNSPVFQEDSYVLTVRENNSPAVFIGKVHAEDLD
LGENAQVTYSLLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFL
SLSSQVTVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQN
SWLSYHLLKATDLGLFSVQRQNGEIRTLRQISERDPMMQKLVILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFQDPSKHSRKVNPTTKYLVISLAVLSFLFLFSVTVIIIIHLYQKIKH
REKFTVQEHFYDDCNFPNNLVQGRGNGSLSQPCPYDMCSATGTGNSEFRFLKRFMPNFPF
PHATGEVKTENDASLPPDSNRNRSRGSEGHARAGDDYM
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggcagctgcgcgcaggaagcctttgcagaacaggcaggtgggctctcttctccttctc
tggtgtgtgtctgtgggaggtgcggccactatccgctattcggtggcagaggagatggag
agcggttcctttgtggctaatgtggctaaggacctagggctagaggtggggaagctggca
gagcgtggggcgcggctcgttgccgagggcaacaggttgcatttccggctccatcgcaaa
actggagatttgttcgtcaaagagaaactagatcgcgaggcactttgtggcaaagctgac
ccgtgtgtgctgcactttgaaattattctcgccgagccgctccagtccttccgggtggaa
gtcagagtatttgatatcaatgacaatgcaccagtttttctaaacaaagagcctctttta
aagattccagagagcaccccattgggctcacgctttccactgcagagtgcccaagatctg
gacgtgggactcaatggtcttcaaaactacaccttgagtgcaaacacctatttccacctg
cacacacgcttccgaagccatggtcccaaatatgcagaacttgtgttggataatccccta
gatagagaggcgcagcctgaagtcaacttgaccattacagcggtggatggtgggtcccct
cccaaatctggcaccgccaacattcgagtggttgtcctggacgtcaatgaccacgtgccc
cagttctctcgcttggtgtaccgtgctcaggtgccagagaacagtgacaatggctctttg
gtggtggtagtgactgccacagacctggatgagggcaccaataagcagataacttactct
ttagctgaaaatccagaagcagttctacggacatttcttgttgacccacaaactggagag
gttcgactccgtgggcccttagattttgaaacgatagaaacatacgacattgacattcaa
gctacagatggagggggtctttctgctcacagcaaagtcttggtggaagtggtggatgta
aacgacaatcctccagaagtgacaatctcctcggtgtccagccctcttgctgaggactct
ccactccagactgtagtggctctcttcactatccgagaccgggatgtgcgagttggaggg
aaaatcacctgtttcctcaaagaagatttgccttttgtagtcaaacacacattccggaat
tcttactcgctagtcactgacagaatcttggatagggaagatgtctccaactataatatc
accctcgttgccatggacactggaccgcccagtctgtccaccgagactgtgattgaagtg
gtaatatctgatataaatgacaattctccagtttttcaggaggattcctatgtcttgact
gtccgtgaaaacaacagtcctgcagtttttattggcaaagtccacgcagaggatctagat
ttgggtgaaaatgctcaagtaacatactccctgctgcctccaaagagtggcgatctgtca
gtctttgcttacatctccataaactcagataacggaaagctctatgcgctaagaactatg
gattatgaggccattcaagactttcagtttgtagtcaaggcaactgatggtggctttctg
tcgttgagtagccaagttactgtcagagtggttgtcctggatgacaacgacaatcgtccg
atgatcctgtacccactgcagaatggcactttgccctgcaatgacctggtgccaaggtct
gcagaggcaggatacctggtgaccaaagtagtggctgttgacggtgattcggggcagaat
tcttggctttcataccatcttcttaaagccacagatcttgggttattttctgttcaaaga
caaaatggggaaatacgtacactgaggcagatatctgagagagaccctatgatgcagaaa
ctggtcattcttgttcaggatcatggccaaccagctctctccactactgcctcactcaac
atcctgctggtggatggcttttcagagccttacttgcagttccaggatccatccaagcat
tctagaaaggtaaatccaaccacaaaatatttggtcatttctctggctgtgctttcattt
ctttttctcttctccgtcactgtgattattattatacacctctaccagaagattaaacac
agagagaaatttacagttcaagagcacttctatgacgactgtaatttccctaacaacttg
gtgcaaggaagaggcaatggctccttatcccagccttgtccatatgatatgtgctcagcc
actggaactggaaacagcgagttccgtttccttaagcgatttatgcccaatttcccattc
ccccatgccactggggaggtgaaaacagagaatgacgccagtttgcctccagattctaat
agaaatcggtctcggggttcagagggccatgccagggcaggagatgactatatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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