KEGG   Rattus norvegicus (rat): 365155
Entry
365155            CDS       T01003                                 
Symbol
Prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
  KO
K20796  [histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:2.1.1.354]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00310  Lysine degradation
rno01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rno00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    365155 (Prdm9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    365155 (Prdm9)
   03036 Chromosome and associated proteins [BR:rno03036]
    365155 (Prdm9)
Enzymes [BR:rno01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     365155 (Prdm9)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    365155 (Prdm9)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    365155 (Prdm9)
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     365155 (Prdm9)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 PRDM2_PR zf-C2H2_4 SSXRD zf-C2H2_11 zf-C2H2_5 zf-C2H2_6 SET KRAB zf-C2H2_3rep Zn_ribbon_SprT Zn-ribbon_8 zf_PR_Knuckle zf-met zf-C2H2_8 Actin_micro
Other DBs
NCBI-GeneID: 365155
NCBI-ProteinID: NP_001102373
RGD: 1305247
Ensembl: ENSRNOG00000021493
UniProt: P0C6Y7
Position
1:complement(65178666..65198851)
AA seq 796 aa
MSRTMNTNKPEENSTEGDAGKLEWKPKVKDEFKDISIYFSKEEWAEMGEWEKIRYRNVKR
NYKMLISIGLRAPRPAFMCYQRQAIKPQINDNEDSDEEWTPKQQVSSPWVPFRVKHSKQQ
KETPRMPLSDKSSVKEVFGIENLLNTSGSEHAQKPVCSPEEGNTSGQHFGKKLKLRRKNV
EVNRYRLRERKDLAYEEVSEPQDDDYLYCEKCQNFFIDSCPNHGPPVFVKDSVVDRGHPN
HSVLSLPPGLRIGPSGIPEAGLGVWNEASDLPVGLHFGPYKGQITEDEEAANSGYSWLIT
KGRNCYEYVDGQDESQANWMRYVNCARDDEEQNLVAFQYHRKIFYRTCRVIRPGRELLVW
YGDEYGQELGIKWGSKMKKGFTAGRELRTEIHPCFLCSLAFSSQKFLTQHVEWNHRTEIF
PGASARINPKPGDPCPDQLQEHFDSQNKNDKASNEVKRKSKPRHKWTRQRISTAFSSTLK
EQMRSEESKRTVEEELRTGQTTNIEDTAKSFIASETSRIERQCGQCFSDKSNVSEHQRTH
TGEKPYICRECGRGFSQKSDLIKHQRTHTEEKPYICRECGRGFTQKSDLIKHQRTHTEEK
PYICRECGRGFTQKSDLIKHQRTHTGEKPYICRECGRGFTQKSDLIKHQRTHTEEKPYIC
RECGRGFTQKSSLIRHQRTHTGEKPYICRECGLGFTQKSNLIRHLRTHTGEKPYICRECG
LGFTRKSNLIQHQRTHTGEKPYICRECGQGLTWKSSLIQHQRTHTGEKPYICRECGRGFT
WKSSLIQHQRTHTVEK
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgtcccgcaccatgaacaccaacaagccggaagagaatagtactgaaggagatgcaggg
aaactcgagtggaaacccaaggtcaaagatgagttcaaagacatttccatatacttctcc
aaagaagaatgggcagagatgggagagtgggagaaaattcgctatagaaatgtgaaaagg
aactataaaatgctgatttctataggtctcagagcccctagaccagctttcatgtgttac
caaaggcaggcaatcaagccccagataaatgacaatgaggattctgatgaggaatggaca
ccaaagcagcaagtcagttctccttgggtgcctttccgggtgaagcacagtaaacaacag
aaggaaacacccagaatgccattaagtgataaatctagtgtgaaggaagtatttggaata
gaaaatttgctgaacacaagtggctcagagcatgcccagaaaccagtgtgctcccctgaa
gaagggaatacctccggacagcactttggaaaaaaactgaaactcaggagaaagaatgtt
gaagtgaataggtacaggctgcgagagagaaaggaccttgcatatgaagaggtcagcgag
ccccaggatgatgactacctctattgtgagaagtgccagaatttcttcatcgacagttgt
cccaaccatgggcctcctgtatttgtaaaagacagtgtggtggacagggggcatcccaac
cactcagtcctcagtctgccccctgggctgagaattggtccatcaggcatccctgaagct
ggacttggagtatggaatgaagcatctgatctaccagtgggtctgcactttggtccctat
aagggccagattacagaggatgaagaggcagccaacagtggatactcctggctgatcacc
aagggaagaaactgctatgagtatgtggatgggcaggatgagtcccaagccaactggatg
aggtatgtgaactgtgcccgggatgacgaagagcagaacctggtggcctttcaatatcac
aggaaaatcttctatcggacctgccgggtcatcaggccaggtcgcgagcttctggtctgg
tatggggatgagtatggccaagagctgggcatcaagtggggaagcaagatgaagaaagga
ttcacagcaggaagagaactaaggacagagattcatccttgttttttgtgctctttggcc
ttctcaagtcagaaattcctcactcaacatgtagaatggaatcatcgcacagaaatcttc
ccaggagcatctgcaaggataaatcctaagccaggagatccctgtccagatcagcttcag
gaacattttgattcacagaacaagaatgacaaagccagcaatgaagtcaaaagaaaatcc
aaacccaggcataaatggacaagacagaggatttcaacagccttttccagtactctcaaa
gaacaaatgagatctgaggaaagtaagagaactgtagaagaagagcttagaacaggccag
acaacaaatatagaggacacagccaaatcatttattgcatcagaaacctcaagaattgaa
aggcaatgtgggcaatgtttcagtgataagtcaaatgtcagtgagcaccagaggacacac
acaggggagaagccctacatttgcagggagtgtgggcggggcttttcacagaagtcagac
ctcatcaagcaccagaggacacacacagaggagaagccctacatttgcagggagtgtggg
cggggctttacacagaagtcagacctcatcaagcaccagaggacacacacagaggagaag
ccctacatttgcagggagtgtgggcggggctttacacagaagtcagacctcatcaagcac
cagaggacacacacaggggagaagccctacatttgcagggagtgtgggcggggctttaca
cagaagtcagacctcatcaagcaccagaggacacacacagaggagaagccctacatttgc
agggagtgtgggcggggctttacacagaagtcaagcctcatccggcaccagaggacacac
acaggggagaagccctacatttgcagggagtgtgggctgggctttacacagaagtcaaac
ctcatccggcacctgaggacacacacaggggagaagccctacatttgcagggagtgtggg
ctgggctttacacggaagtcaaacctcatccagcaccagaggacacacacaggggagaag
ccctacatttgcagggagtgtgggcagggccttacatggaagtcaagcctcatccagcac
cagaggacacacacaggggagaagccctacatttgcagggagtgtgggcggggctttaca
tggaagtcaagcctcatccagcaccagaggacacacacagtggagaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (46)   

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