KEGG   Rattus norvegicus (rat): 365215
Entry
365215            CDS       T01003                                 
Symbol
Smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
  KO
K18735  protein SMG9
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    365215 (Smg9)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     365215 (Smg9)
SSDB
Motif
Pfam: Smg8_Smg9 AAA_30 DUF6079
Other DBs
NCBI-GeneID: 365215
NCBI-ProteinID: NP_001014265
RGD: 1309888
Ensembl: ENSRNOG00000019596
UniProt: Q5PQS6 A6J8Y8
Position
1:89116459..89139182
AA seq 520 aa
MSESGHSQPGLYGIERRRRWKEPGSSGPQNLSGPGGRERDYIAPWERERRDGSEDPSTNV
MQKTPIILSKPPAERSKQPPPSTAPAAPPAPAPLEKPIVLMKPREEGKGPVAATGASTPE
GTAPPPPTAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPTAMDPVVGQAKLLPPERMKHS
IKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRA
QSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYV
EMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSAAGSDEG
TEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNIFPGLPPD
FLDAEVNLFLVPFMDSEAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSM
ARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA
NT seq 1563 nt   +upstreamnt  +downstreamnt
atgtcggagtctgggcacagtcagcctgggctctacgggatagagcggcggcggaggtgg
aaagagccaggctccagtggcccccagaatctttctgggcctggcggtcgggaaagagac
tacattgccccctgggaaagagagagacgggatggcagcgaagaccccagcaccaacgtc
atgcagaaaacccccatcatcctctcaaagcctccagctgagcggtcaaagcagccacca
cctagtacagccccagctgcaccgccagccccagccccactggagaaacccattgtgctc
atgaagccacgtgaggaggggaaggggcctgtggctgcaacaggggcttccacccccgaa
ggtactgccccaccaccccccacggcccctgcaccaccaaaaggagagaaggaggggcag
agacccacacagcctgtgtaccagattcagaaccggggcatgggcactgctgccccaact
gccatggaccctgtggtgggccaggctaagctcctacccccggagcgcatgaagcacagc
atcaagctggtagacgaccagatgaactggtgtgacagcgccattgagtacctgctggat
cagacggacgtgttagtggtcggtgtcttaggcctccaggggacaggcaagtccatggtc
atgtcactgctgtcagcaaacactccagaggaagaccagagggcgtacgtcttccgggct
cagagtgcggagatgaaggaacgagggggcaaccagaccagcggcattgacttcttcatt
acccaagagcggattgtcttcctagacacgcagcccatcctcagcccgtccatcttggac
cacctcatcaataacgaccgcaaactgcctccggagtataacctccctcacacctatgtg
gaaatgcagtccctgcagatagctgccttcctcttcacggtctgccacgtggtgatcgtc
gtgcaggattggttcacggacctcagtctgtacaggttcctgcaaacagcagagatggtg
aagccatcgactccatcccccagccatgagtccagcagcgcggcaggctcggatgagggc
actgagtactacccgcacctcgtcttcctgcagaacaaggcacgtagggaggacttctgt
ccccggaagttacgtcagatgcacctaatgattgaccagcttatggcacattcccacctg
cgctacaaggggacgctgtccatgctgcagtgcaacatcttcccagggctgccgcccgac
ttcctggacgctgaggtcaacttgttcctggtgcccttcatggacagtgaagctgagaat
gagaacccacctcgagcagggcctggatccagccccctcttctccctgctgcctgggtac
cgaggtcaccctagcttccagtccctggtcagcaagctccgcagccaggtgatgtcaatg
gctcggccacagctgtcgcacacaatcctcacggagaagaactggttccactatgctgcc
agaatctgggatggggtgaagaagtcctcagccctggcagagtacagccgcttgctggcc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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