KEGG   Rattus norvegicus (rat): 365407
Entry
365407            CDS       T01003                                 
Symbol
Cpsf7
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 7 isoform 2
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    365407 (Cpsf7)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    365407 (Cpsf7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    365407 (Cpsf7)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     365407 (Cpsf7)
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 365407
NCBI-ProteinID: NP_001014267
RGD: 1305441
Ensembl: ENSRNOG00000020668
UniProt: Q5XI29
Position
1:216592745..216616860
AA seq 462 aa
MSEGVDLIDIYADEEFNQDSEFNNTDQIDLYDDVLTAASQPSDDRSSSTEPPPPVRQEPA
PKPNNKTPAILYTYSGLRSRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA
NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIPPRA
HSRDSSDSADGRATPSENLVPSSARVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLS
SSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLNPAFFPPPNATVGPPPDT
YMKASTPYNHHGSRDSGPLPSTVSEAEFEEIMKRNRAISSSAISKAVSGASAGDYSDAIE
TLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSYSVGASGSSSRKRHRSRERSPS
RSRESSRRHRDLLHNEDRHDDYFQERNREHERHRDRERDRHH
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgtcagaaggagtggatttgattgatatatacgctgatgaagagttcaatcaggactcg
gagttcaacaacacagatcagattgacctatatgatgatgtgctgacggcggcctcacag
ccctcggatgacagaagcagtagcacagaaccaccccctcctgtccgccaggagccagct
cccaaaccaaacaacaagacccctgcaattctgtacacatacagtggcctgcggagtcgg
cgagcagctgtctatgtaggcagtttctcctggtggaccacagaccagcagctgatccag
gttattcgctctataggagtctatgatgtggtggagttgaaatttgcagagaaccgtgca
aatggccagtctaaagggtatgctgaggtggtggtagcctctgaaaattctgtccacaaa
ttgctggaactcttaccaggaaaagttcttaatggagaaaaagtagatgtgaggccagcc
actcggcagaacttatcacaatttgaggctcaggctcggaaacgaatacctccacgggcc
cactcccgagattctagtgattctgctgatggacgggcaaccccctctgagaatcttgta
ccctcatctgctcgtgtggataagccccccagcgtgttgccctactttaaccgtcctcct
tcagcccttcccctaatgggtctgcccccacccccaattccacccccaccacctctctcc
tcaagctttggtgtccctcctcctcctcctggtatccactaccagcatctcatgcccccc
cctcctcgattacctcctcatctggctgtacctccccctggggccatcccaccagccctt
cacctcaatccagccttcttccccccaccaaatgctacagtggggcctccaccagatact
tacatgaaggcctctacaccctataaccaccatggcagccgagattcaggccctctaccg
tctacagtgagtgaagctgaatttgaagagataatgaagcgaaacagagcaatttccagc
agtgccatttccaaagcagtgtctggagctagtgcaggggattacagtgacgccattgag
acactactcacagccattgcagttatcaaacagtcccgagtcgccaatgatgagcgttgt
cgggtcctcatctcttcacttaaggactgtcttcatggcatagaggccaagtcttacagt
gtgggtgccagtggaagctcttctaggaaaagacatcggtcaagggagaggtcacccagc
cggtcccgagagagtagcagaaggcaccgagacttgcttcataatgaagaccgacatgat
gattatttccaagaaaggaaccgggagcatgagagacaccgggatagagaacgggaccgg
caccactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (19)   
   RefSeq(nuc) (15)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (41)   

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