KEGG   Rattus norvegicus (rat): 365528
Entry
365528            CDS       T01003                                 
Symbol
Trim40
Name
(RefSeq) E3 ubiquitin ligase TRIM40
  KO
K12016  tripartite motif-containing protein 40
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    365528 (Trim40)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    365528 (Trim40)
SSDB
Motif
Pfam: zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-RING_5 zf-B_box DUF2396 DUF4337 DUF1400
Other DBs
NCBI-GeneID: 365528
NCBI-ProteinID: NP_001009175
RGD: 1359645
Ensembl: ENSRNOG00000000783
Vega: OTTRNOG00000001474
UniProt: Q6MFY8
Position
20:1680554..1691123
AA seq 247 aa
MVPLDKDNQDICPICLDPLKEAVSTDCRHLFCRMCLIRHMDKASVSGVLSCPVCRKPCSE
TVLGDNYICHTHQKRVCRFCESSRHLLCEECLQSPEHRAHTELSIENAISHYKERLNRRS
RKLRKDLGDLQRLKAQEEKMLQALQVDWGSHRPRTEQQNQDQTELQQKALPRHWLDQRED
PPEEVAKVFNFSEAVTQLSILVSSLERMAKELDASTLKDASDLLDRSSQQKLEGLLSHVP
PANSKLS
NT seq 744 nt   +upstreamnt  +downstreamnt
atggtccctcttgacaaggacaaccaggacatttgtcctatctgcctggatcccctgaag
gaggctgtgagcaccgactgcagacaccttttctgccgcatgtgcctgatccggcacatg
gataaggcttcggtctccggggttctcagctgcccggtctgcaggaagccctgttcggag
acagtccttggagacaattacatctgccacactcaccagaagagggtgtgcaggttctgt
gagtctagcagacacctcctgtgtgaggaatgcctccagtcccccgaacaccgggcccat
actgagctctccattgaaaatgccatcagccactacaaggaaagactcaatcggagaagc
aggaagctcagaaaggaccttggggaccttcaacggctgaaggctcaggaagagaagatg
ctccaggctctgcaggttgattgggggagccacaggccaagaactgagcagcagaaccaa
gaccaaaccgagctacagcagaaggccctccctcggcattggctggaccaacgagaggac
ccgccagaggaggtggccaaggtctttaacttctctgaggcagtaacacagctcagcatc
ctggtttccagtctggaaaggatggccaaggaactggacgccagcaccctgaaggatgcc
agcgacttactggacaggagttcgcaacagaaactagaaggacttctctctcatgttcct
ccagccaactctaagctcagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (11)   
   Pfam (11)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system