KEGG   Rattus norvegicus (rat): 365751
Entry
365751            CDS       T01003                                 
Symbol
Trim55
Name
(RefSeq) tripartite motif-containing protein 55
  KO
K10654  tripartite motif-containing protein 55
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    365751 (Trim55)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    365751 (Trim55)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    365751 (Trim55)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4 zf-C3HC4_2 zf-B_box zf-RING_5 zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-RING_6 Sina_RING FliS DNA_topoisoIV CYP38_PsbQ-like
Other DBs
NCBI-GeneID: 365751
NCBI-ProteinID: NP_001012218
RGD: 1306943
Ensembl: ENSRNOG00000012723
UniProt: Q5PQN5 A6IHB9
Position
2:104016361..104058302
AA seq 545 aa
MSTSLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
YLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKLD
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAVLV
GSNDRVQGVISQLEDTCKTIEECCRKQKQDLCEKFDHLYSILEERKTEMTQAITRTQEEK
LEHVRTLIRKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLQKITEASKAFQMEKI
EQGYEIMNNFTVNLNREEKIIREIDFSREEEDEDDEGEVDEEGEGEDAVEVEEAENVQVA
SSGEEETLEKAAEPSELAAEIQAASGPLLASSPDSVSSLPPAADVLVTQGEVVPTDSQQT
TQSETSGPSAAETADPLFYPSWYKGQSRKMISNPPHTPGGEGLSQIGPSAAEDSSVQSAE
VAEAAANEQAAVSGKESSSTAATSQIGFEASSPQGQAAALGSGGGADSEPARHVFSFSWL
NSLNE
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgagcacttctctgaattacaagtctttctccaaagagcagcagaccatggataactta
gaaaagcaactgatctgtcccatctgcctagagatgttcaccaagcccgtggtcattctc
ccgtgccagcataacctgtgcaggaagtgcgccagtgacatcttccaggcctctaacccg
tacttacccacaagaggaggcaccaccgtggcgtcggggggccgcttccgctgcccctct
tgcagacatgaagtggtgttagacaggcatggggtctatggactacagaggaacctgctt
gtcgagaacatcattgatatctacaagcaggaatccaccaggccagaaaaaaagttggac
cagcccatgtgtgaggagcatgaagaggaacgcatcaacatctactgtctgaactgtgaa
gtgcccacctgctccctgtgcaaggtttttggcgctcataaggactgccaggtggctccc
ctgacccatgtgttccagaggcagaagtcagagctcagtgatggtattgctgtacttgtg
ggaagcaacgacagagtccagggtgtgatcagccagctggaggacacctgtaaaactatt
gaggagtgctgcagaaagcagaaacaggacctgtgtgagaagtttgatcacctgtatagc
atcctggaggagaggaagaccgaaatgacccaagccatcacccgaacacaggaagagaaa
ctggagcatgtccgaactcttatcagaaagtattctgatcacctggagaatgtatcaaag
ttggtggagtcaggaatccagttcatggatgagccagaaatggcagtgtttctgcagaat
gccaagaccctgttgcaaaagatcacagaagcatcgaaggcgtttcagatggagaaaata
gaacaaggttatgagatcatgaacaacttcacagtcaacctcaatagagaagaaaaaatt
atccgtgaaattgatttttctagagaagaggaagatgaagacgatgaaggagaagtagat
gaagaaggagaaggagaggatgcagtagaagtagaagaggcagaaaatgttcaagtagca
tcatcaggagaagaggagactctggaaaaagctgcagagccctctgagctggctgcagag
atccaggctgcctcagggccactacttgcttcctctccagattcagtttcatccctgcca
cctgctgcagatgtcctggtgacacagggggaggtggtgcccactgactctcagcagacc
acacaatctgaaacttcaggcccttcagcagcggaaactgcggatcccttgttttaccct
agttggtataaaggccaaagccggaaaatgatctccaacccacctcacactcctgggggt
gaaggtctgagtcaaatagggccttcggctgctgaggattccagtgtgcagtccgcagaa
gtagcagaagccgcagccaatgagcaggcagcagtgagtggtaaggagtctagttcaact
gcagctacctctcagattggatttgaggcctcttctccccagggacaggctgcagccttg
gggagtgggggtggggctgattctgagccagctcgccacgtcttctccttctcctggttg
aattccctaaatgaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (34)   

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