KEGG   Rattus norvegicus (rat): 366952
Entry
366952            CDS       T01003                                 
Symbol
Cpsf1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    366952 (Cpsf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    366952 (Cpsf1)
   03019 Messenger RNA biogenesis [BR:rno03019]
    366952 (Cpsf1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     366952 (Cpsf1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     366952 (Cpsf1)
SSDB
Motif
Pfam: CPSF_A MMS1_N UspB
Other DBs
NCBI-GeneID: 366952
NCBI-ProteinID: NP_001388145
RGD: 1306406
Ensembl: ENSRNOG00000030705
Position
7:complement(110200078..110210644)
AA seq 1439 aa
MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTEGK
AHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEG
QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVAL
NSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSK
KKRVDPTVGWTGGKTQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEP
AFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVR
KEEEETPKAESTEQEPSAPKAEEDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQG
PTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMSAEGH
VTMFLLKSDSYGGRHHRLALHKPPLHHQSKVIALCLYRDVSGMFTTESRLGGARDELGGR
SGSEAEGLGSETSPTVDDEEEMLYGDSSSLFSPSKEEARRSNQPPADRDPAPFRADPTHW
CLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEVRKEEATRQGELP
LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNINFREK
KPKPSKKKAEGCSTEEGSGVRGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGALRLH
PMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHY
VAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFEAIERDDRYIHPQQEAFSIQLISPVSW
EAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDV
IEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMA
FIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDN
AQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPS
KKSVMWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRML
HVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVTAHF
NT seq 4320 nt   +upstreamnt  +downstreamnt
atgtacgcggtgtacaagcaggcgcacccgcccaccgggctcgagtttgccatgtactgc
aacttcttcaacaacagtgagcgcaacctcgtggtggccggcacctcgcagctctatgtg
taccgcctgaaccgcgacgctgaggctctgaccaagaatgatgggagcacagagggaaag
gcccatcgagagaaactagagctggtagcctccttctctttttttggcaatgtcatgtcc
atggccagcgtgcagctcgcaggtgccaaacgcgatgctttgcttctcagcttcaaagac
gctaagctgtctgtggtggagtacgacccaggcactcatgacctgaagaccctgtctctg
cactactttgaggagcctgaacttcgggatggatttgtgcagaacgtgcatacgccccgt
gtgcgggtggaccctgacgggcgctgtgcggcaatgctcatctatggcacaagactggta
gttctgcctttccgcagagagagcctggctgaggagcatgaagggctcatgggtgagggg
cagaggtccagcttcctgcccagctacatcatcgatgtgcgggctctggatgagaagctg
ctcaacatcattgacctgcagttcctacacggctactatgagcccaccctgcttatcctg
tttgagcccaaccagacctggccagggcgggtggctgtgaggcaggacacgtgctccatt
gtggctatctcgctgaacatcacacagaaagtccatccagtcatctggtccctcaccagc
ttgccttttgactgtacccaggccctggctgtgcccaagcccataggtggggtagtgatc
ttcgctgtcaactccctgttgtacctgaaccagagtgttcccccatatggcgtggctctc
aacagccttaccacgggcaccactgcttttccattacgtacccaagaaggtgtaaggatc
accctggactgtgcacaggcggccttcatctcttatgacaagatggtcatctccctcaag
ggtggtgagatttatgtgctgaccctcatcactgacggcatgcgaagtgtccgagcattt
cactttgacaaggcagctgctagtgtcctcaccaccagcatggtcacaatggagcctgga
tacctgttcctaggctctcgcctgggcaattccctcctcctcaagtacacggagaagctg
caggaacccccagccagctctgttcgtgaggctgctgacaaggaagaacctccctcaaag
aagaagcgagtggaccctacagtgggctggacaggaggcaagacacaggatgaggtggat
gaaattgaagtttatggcagtgaggcccagtcaggcacacagttagctacttactctttt
gaggtatgtgatagcatgctcaacattggaccctgtgccaatgctgctgtgggcgagcct
gccttcctctccgaagagtttcagaacagccctgagccagacctggagattgtggtttgt
tccggctacgggaaaaacggggccctgtctgtgttgcagaagagtatccggccccaggtg
gtgacaacctttgaacttcctggatgctatgatatgtggacagtcattgctcctgtgcgg
aaagaggaggaagaaacacccaaagcagagagcacagagcaggaacctagtgcccctaaa
gcagaggaggatgggcgaagacatggattccttattcttagccgagaagactcaaccatg
atcctacagactggccaggagatcatggagctggacaccagtggctttgccacacagggt
cctactgtctttgctggaaacattggggacaatcgttatattgtccaagtctcgccattg
ggcattcgcctgttggaaggtgtgaatcagctgcacttcatccctgtggacctgggcgcc
cccatcgtgcagtgtgctgtggctgatccctatgtggtcatcatgagtgctgagggacac
gttaccatgttcctactcaagagcgattcctatggtggccgccaccaccggctggcacta
cacaagcctccactacatcatcagtctaaggtgattgcgctctgcctgtaccgagatgtc
agtggcatgttcaccactgagagccgcctgggtggggcccgtgatgaactgggtggccga
agtggctcagaggctgaaggcctgggctcagaaacaagccccacagtggacgatgaggaa
gagatgctatatggggactccagttccctcttcagtcccagcaaagaggaggcccgaagg
agcaaccagccaccagctgatcgtgaccctgcacccttcagggctgaccccactcactgg
tgcctgctggtgcgggagaatggcaccatggagatctaccagctcccagactggcggctg
gtattcctagttaagaacttccctgtgggacagcgggttctggtggatagttcatttgga
cagcccactacacaaggtgaagtccgaaaggaggaggccacacgccagggggagctgcct
ttggtcaaggaggtgttattggttgctctgggaagccggcagagcaggccctacctgctg
gtacatgtggaccaggagttgcttatctatgaagcctttccccatgactctcagcttggc
cagggaaaccttaaagtccgtttcaagaaggtcccccacaacatcaacttccgtgaaaag
aagccaaagccatccaagaagaaggcagaaggttgcagcactgaggagggatctggagtc
cggggccgtgtggcacgtttccgctactttgaggacatttatggctattcgggggtcttt
atctgtggaccctcacctcactggctcctggtaactggccgtggggctctgcgtctgcac
cccatgggcattgatggccccatcgactcctttgctccattccacaacgtgaactgcccc
cgtggtttcctgtacttcaacagacagggagagctgaggatcagtgtcctgcctgcctac
ctgtcctatgatgccccatggccggtcaggaagattccactccgatgcacagcccactat
gtagcctaccacgtggaatccaaggtatatgctgtggccaccagcaccaacacaccttgc
actagaatcccacgcatgactggtgaggagaaagaatttgaggccattgagagagatgac
agatacatccacccccagcaggaagccttctccatccagctcatctccccagtcagctgg
gaggccatccccaatgccaggatcgagctagaggaatgggagcatgtcacgtgcatgaag
acagtgtcactgcgcagtgaggagaccgtgtcaggcctaaagggctatgtggctgctggg
acctgcctcatgcagggggaggaggtcacgtgccgtgggcggatcctgatcatggatgtg
attgaagtggtgcctgagccggggcagcccctgaccaagaacaagttcaaagtcctgtat
gagaaggaacagaaagggcccgtgactgcgctgtgccactgcaatggccacctggtgtca
gccattggccaaaaaatcttcctgtggagcctgcgggctagcgagctgactggcatggcc
ttcatcgacacccagctgtacatccaccagatgatcagcgtcaagaacttcatcctggca
gcagacgtcatgaagagcatctcactgctgcgctaccaggaggagagcaaaacgctcagc
ctggtgtcccgggatgccaagcctttggaggtatacagcgtggacttcatggtggacaat
gcccagctgggcttcttggtgtctgaccgagaccgcaatcttatggtgtatatgtatctg
ccagaagccaaagagagttttgggggcatgcgcctgctgcgccgagcagacttccatgtg
ggtgcccacgtgaacacgttctggaggaccccatgccgaggtgctgctgaggggcccagc
aagaagtcggtcatgtgggaaaacaagcatatcacatggtttgcaacccttgatggtggc
attgggctcctgctgcccatgcaagagaagacatacagacgactgctgatgctgcagaat
gcactgaccaccatgctaccccaccacgctggcctcaacccccgagccttccgaatgctg
catgtagaccggcgcatcctgcagaatgctgtacgcaacgtcctcgatggagaactgctg
aaccgttacctatacctcagcaccatggagcgcagtgagctggccaagaagataggcacc
acacctgacatcatcctggacgacttgctggagacagaccgcgtcacggctcacttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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