KEGG   Rattus norvegicus (rat): 494322
Entry
494322            CDS       T01003                                 
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1
  KO
K10864  DNA mismatch repair protein PMS1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    494322 (Pms1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     494322 (Pms1)
SSDB
Motif
Pfam: DNA_mis_repair HMG_box HMG_box_2 HATPase_c_3 HATPase_c CCDC71L
Other DBs
NCBI-GeneID: 494322
NCBI-ProteinID: NP_001009535
RGD: 1359511
Ensembl: ENSRNOG00000004076
UniProt: Q6P7D0
Position
9:48229403..48340237
AA seq 919 aa
MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGANSIDVKLENYGFDKIEIRDNGAG
IKAVDVPVMAVKYYTSKISSHEDLQTLTTYGFRGEALGAICNVAEVVVTTRTAADDFSTQ
YVLDGSGHILSQKPSHLGQGTTVTVLKLFKNLPVRRQFYSTPKKCKDELKNVQDLLISYA
VLKPDLRITFVHNKAVIWQKSRVPDHRMALMSVLGTAVMGNMESVERYCEDSQIHLRGLF
PKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLKID
VPSAEVDINLTPDKSQVLLQNKESVLIALENLLMTCYGPLPTTESYENNRVDVSSANVVI
SETTETDVLFNKMESSGNKYPNADTLAIPFQNDESRKNTDHHLNEQINIGHCDGHFSGEY
SHINKDTFQNIPRNNLSSEANQSKHSETHSADSIEHIQGENGRSGTGENGEDGKKTLPEK
ALEICADDWSKGNVFNSMGENIEPVKILVPQKSLSCKVTNSHPNPEPENLSVGPGSRTSN
VIDNRPGQLTAYDLISSRAVKKPMSACALFIQDHRTQFLAENPKTGLEDVTAQIKAQWET
LSEEEKHKYEEKAKKDLERYNNQMKKAIEQEAQVSLKDGRKKLRATGAWGCTQRHKVKDL
SNQPKLDELFQSQNEKKSENIKITKIPFSMENLKVNFNKQKEVDLEEKDEICLIHSLKFP
DAWLVTSRADVMLLNPYRVEEALLFKRLLENHKFLAEPLDKPIVLTESLFNGSDYLEVLH
KMSTVEERCRGSVYLCDPRLTANGFKIRLTPGVSSAENYLEIEGMAKCLPFYGVMDLKEI
LNAIVNKNAKEIYECRPRKVINYLEGEAVRLSRQLPMYLPQEDVQDLIYKMKHQFGKEIK
GCVHGRPFLHHLIHLPGTS
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgaaacagttgcctgcagcgacagttcgcctcctgtccagttctcagacaatcacttca
gtggtcagtgttgtgaaagagctcattgaaaactccttggatgccggagccaacagcatt
gatgttaaactggagaactatgggtttgataaaattgagattcgggacaatggtgcgggc
atcaaggctgtggatgtccctgtcatggcagtaaagtactacacctccaagatcagcagt
catgaagaccttcaaactctcacaacctatggtttccgtggtgaagccttgggggcaata
tgcaatgttgcagaggtggtagtgacaacaaggacagctgctgatgactttagcacccag
tatgttttagatggcagtggccacatactttctcagaagccttcacatcttggtcaaggt
acaactgtaacggttctaaagttgtttaagaatcttcctgtaaggagacaattttattca
accccaaaaaagtgtaaagatgaactaaaaaatgtacaggatcttctcataagctacgct
gtcctgaaacctgacctaaggattacttttgtacataataaggcagttatttggcagaaa
agtagagttccagatcacaggatggctctaatgtcggttctgggaactgctgtcatgggc
aacatggagtctgttgagcggtactgtgaagactctcagattcacctacgtggattattt
ccaaagcatgatgcagaccacaattccacaagtctttcaaccccagagagaagtttcatc
tttattaatagtcgaccagtacatcaaaaagatatactaaagttaatccgacattattat
aacctgaagtgcctaaaggaatctacccgcttgtaccccattttctttctgaaaattgat
gttccttcagctgaggtggatataaatctaacaccagataaaagtcaagtgctattacag
aataaggaatctgttttaattgctcttgaaaatctgctgatgacctgttatggaccacta
cccactacagagtcttatgaaaataacagagtagatgtttcctcagctaatgttgtcatt
agtgaaacaacagaaacagatgtgctttttaataaaatggaatcatccggaaataaatac
ccaaatgctgatactttggctattcccttccaaaatgatgaatctagaaaaaacactgac
catcatttaaacgaacagataaatataggtcactgtgatggtcattttagtggtgaatat
tctcacattaataaggacacgtttcaaaatatccctaggaataatttatcatcagaggct
aatcagagtaaacacagtgagactcattctgcagattctattgagcatatccaaggagaa
aatggcaggagtggtacaggagaaaatggggaagatggaaaaaaaacacttcctgagaaa
gctctggaaatctgtgcagacgactggagcaagggaaatgtgtttaattcaatgggagag
aatatcgaacctgtgaaaattttagtgccacaaaagagcttatcatgtaaagtgactaat
agtcacccaaaccctgaaccagagaatctcagtgttggtcctggtagcagaacatcaaat
gttattgataacaggcctgggcagcttacagcctatgacttaattagcagtcgagcagtc
aagaagcccatgtcagcctgtgccctgttcattcaagaccaccgcactcagttcctcgca
gagaatcccaagactggtttggaggatgtgacagcacaaattaaagcacagtgggagaca
ctgagtgaagaggaaaaacacaaatatgaggaaaaggctaaaaaagacttggaacgatac
aataaccaaatgaagaaagccattgaacaggaagcacaagtgtcattaaaagatggcagg
aaaaagctaagagccactggtgcgtggggctgcacacagagacacaaggtgaaagacttg
tctaaccagccaaaactggacgagctcttccagtcccagaatgaaaagaagagtgaaaat
attaaaataacaaagatccccttttctatggaaaacttaaaagtgaactttaacaaacaa
aaggaagttgacttagaggagaaggatgagatttgcctgatccacagtctcaagtttcct
gatgcatggctggtcacatccagagcagatgtcatgttgctgaacccatacagagtggag
gaagccctgctatttaaaagacttcttgagaatcataaattccttgcagaaccgctagat
aagccaatcgtattaacagagagtctttttaatgggtctgattatttagaagttttacat
aaaatgtcgacagttgaggaaagatgccgtggatcagtttacctgtgtgaccctcgtctc
acagcaaatggcttcaagatcagattgacaccaggagtttccagtgctgagaactacttg
gaaatagaaggcatggctaagtgcctcccgttctatggagtaatggatctaaaggaaatt
cttaatgctatagtaaacaaaaacgcaaaggagatttatgaatgtagacctcgaaaagtg
ataaattatctggagggagaagccgtccgcctatccagacagctacccatgtacttaccg
caagaggatgtccaggatcttatctataaaatgaagcaccagttcggaaaagaaattaaa
gggtgtgttcatggtcgcccatttcttcatcatttgatccatcttccaggaacttcatga

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