KEGG   Rattus norvegicus (rat): 498328
Entry
498328            CDS       T01003                                 
Symbol
Pkd2
Name
(RefSeq) polycystin-2
  KO
K04986  polycystin 2
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    498328 (Pkd2)
   04040 Ion channels [BR:rno04040]
    498328 (Pkd2)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   498328 (Pkd2)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   498328 (Pkd2)
SSDB
Motif
Pfam: PKD_channel Polycystin_dom Ion_trans Fer4_24 EF-hand_1 EF-hand_7
Other DBs
NCBI-GeneID: 498328
NCBI-ProteinID: NP_001178863
RGD: 1559992
Ensembl: ENSRNOG00000002146
UniProt: D4A5F1 A6K5R6
Position
14:complement(5541821..5585140)
AA seq 966 aa
MVNSSRVQPQPPGDPGRSPAPRASGPGRLLAGGAGLAVPGGLREQRGLEIEMERIRQAAA
RDPPAGASASPSPPLSSCSRQAWSRDNPGFEAEEDDDDDEVEGEEGGMVVEMDVEWRPGS
RRPASSSAVSSAGARGRGLGSYRGAAYPSGRRRRLEDQGAPCPSPAGGGDPLHRHLPLDG
QPPRVAWAERLVRGLRGLWGTRLMEESNANREKYLRSVLRELVTYLFFLILLCILTYGMM
SSNVYYYTRTLSQLFIDTPVSKTEKTNFKTLSSMEDFWKFTEGSFLDGLYWKAQSSNHTQ
ADNRSFIFYENLLLGVPRLRQLRVRNGSCSIPQDLRDEIKECYDVYSVSSEDRAPFGPRN
GTAWIYTSEKDLNGSSHWGIIATYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAA
FIDFSVYNANINLFCVVRLLVEFPATGGVVPSWQFQPVKLIRYVTAFDFFLAACEIIFCF
FILYYVVEEILEIRIHRLNYFRSFWNCLDVVIVVLSVVAMMINIYRMSNAEGLLQFLEDQ
NSFPNFEHVAYWQIQFNNIAAVMVFLVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFTI
MFFIIFLAYAQLAYLVFGTQVDDFSTFQECIFTQFRIILGDINFAEIEEANRVLGPLYFT
TFVFFMFFILLNMFLAIINDSYSEVKSDLAQQKAEMELSDLIRKGCQKALVKLKLKRNTV
DAISESLRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEREHQQMRDDL
EREREDLDLEHSSLPRPMSSRSFPRSLDDSEEEDDEDSGHSSRRRGSISSGVSYEEFQVL
VRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKVKRREVLGRLLDGVAEDARLGRDSEIHR
EQMERLVREELERWESDDAASQSGHGLGTQVGLGGQSHPRSSRPPSSQSAEGLEGGGGNG
STNAHA
NT seq 2901 nt   +upstreamnt  +downstreamnt
atggtgaactccagccgtgtgcagccgcagcctcccggggaccccggacgctcgcccgcg
ccgcgagcgtccgggcccggccgcctgctggcgggaggcgccggcctggcagtccccggc
ggcctgcgggagcagcggggcctggagattgagatggagcgcatccggcaggcggccgct
cgggacccaccggccggagcctcggcctcgccttctcctccgctgtcgtcctgctccagg
caggcatggagccgcgacaacccgggctttgaggccgaagaggatgacgacgacgacgag
gtggaaggagaagaaggagggatggtggtggagatggacgtggagtggcgtccgggcagc
cgaagaccggcctcctcttcggccgtgagctcggcgggcgcccgcggccggggtctggga
agctatcgcggcgcggcttacccgagcgggagacggcgccggctagaggaccagggcgcg
ccgtgtcccagccccgcgggcggcggggacccgctgcatcgccacctcccgctggatggc
cagccgccccgagtggcctgggccgagaggctggtgcgaggactgcgaggtctctgggga
acaagactcatggaagagagcaacgctaaccgagagaaatacctgagaagcgtgttgcgg
gagctggtcacttacctctttttcctcatactcttgtgcatcttgacctatggcatgatg
agctccaacgtgtactactacactcggacactgtcacaacttttcatagacaccccagtg
tctaaaacagagaaaaccaactttaaaactctctcttccatggaggacttctggaagttc
acagaaggctccttcctggatgggctgtactggaaggcacagagcagcaaccatacgcaa
gctgacaaccggagctttattttctatgagaacctgctgctaggagtgccgcgtctacgc
caactccgagtcagaaacggatcctgctccatccctcaggacctgagagatgaaattaaa
gaatgctatgatgtctactctgtcagcagtgaggacagggctccatttggaccgcggaac
ggaactgcgtggatctacacaagtgaaaaagacctgaatggcagcagtcactggggaatc
attgcgacttacagtggagccggttactacctggatctgtccagaaccagggaggagaca
gcggcccagcttgctggcctcaggaggaatttctggctggaccggggcacacgggcagct
ttcattgacttctcggtgtataacgcaaacattaacctgttctgtgtggtcaggttattg
gttgagttcccagcaacgggtggcgtggtgccctcttggcagtttcagcctgtaaaactg
atccgctacgtcacagcctttgatttcttcctggcagcctgtgagattatcttttgtttc
tttatcctttactatgtggtggaagagatattggaaattcggattcacagactgaactat
ttcaggagtttctggaattgtctggatgttgtgattgttgtgttgtccgtagtagccatg
atgattaacatttaccggatgtccaatgctgaggggctgctacagtttctcgaagatcaa
aattctttccccaactttgagcatgtggcatactggcaaatacagttcaacaatatagct
gccgtcatggtatttttggtctggattaagctcttcaaattcatcaatttcaataggacc
atgagtcagctctccacgaccatgtccagatgtgccaaagacctctttggcttcaccatc
atgttcttcatcatcttcttggcatatgcccagttggcgtaccttgtctttggcactcag
gtggatgacttcagtactttccaagagtgtattttcactcagttccgcatcattttgggt
gatatcaacttcgcagagatcgaggaagctaaccgagttttggggccactttattttact
acatttgtgttctttatgttcttcattcttttgaacatgtttctggcgatcatcaatgat
tcctactctgaggtgaaatcagatctggcccagcagaaagcagaaatggaactctcagac
cttatcagaaagggctgccaaaaagcacttgtcaaactaaaacttaaaagaaacaccgta
gacgccatttcagagagtctccggcaaggtggtggcaagctaaactttgatgaacttcgg
caagacctgaaagggaagggccacacggacgcagagatcgaggccatattcactaaatat
gaccaggacggcgaccaggaactgactgagcgtgagcatcagcagatgagagatgacttg
gagagagagagggaggacctagacttggaacacagctctttaccacgtcccatgagcagc
agaagtttccccagaagcctggatgactctgaggaggaagacgatgaagacagtggccat
agttccaggaggaggggaagcatctccagtggggtttcctatgaagagttccaagtactg
gtgagacgcgtggaccgcatggagcactccatcggcagcatcgtgtccaagatcgatgct
gtgattgtcaagcttgagatcatggagcgggccaaggtgaagaggcgagaggtgttagga
aggctgctggatggagtggctgaggatgcgcgcctgggtcgggatagtgagatccacagg
gagcagatggagcgcctggtgcgggaagagctggagcgctgggaatcggatgacgcagct
tcacagtcaggtcacggtctaggcacacaagtgggactcggtggccagtcgcaccccaga
agctcccggcccccttcctcccagtctgcagagggcctggaaggcggaggtggaaacgga
agtaccaacgcgcatgcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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