KEGG   Rattus norvegicus (rat): 499431
Entry
499431            CDS       T01003                                 
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
  KO
K16617  collagen type XIII alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    499431 (Col13a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    499431 (Col13a1)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   499431 (Col13a1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 499431
NCBI-ProteinID: NP_001102642
RGD: 1595704
Ensembl: ENSRNOG00000000552
UniProt: A6K424 A0A0G2K2Q8
Position
20:complement(30326744..30466800)
AA seq 739 aa
MVAERARKAAASSNRGPGDLGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAH
FRTAELQARVLRLESERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGISIIGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCGEYPHREYPSGTLAALRSNP
IISLKLLPLLNSVRLAPPPVIKRRTFQGEQSQAGIQGPPGPPGPPGPIGPLGHPGLPGPI
GPPGLPGPPGPKGDPGIQGYHGRKGERGLPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKG
EKGATGSPGLLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGD
KGQPGAAGEPGPTGPKGSKGEPGKGEMVDYNSSINEALQEIRTLALMGPPGLPGQTGPPG
PPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPPGKDGPPGMKGEVGPPGNPG
EKGETGQAGPPGLDGPTGEKGEPGDEGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEV
PGPPGPEGPPGPPGLQGIPGPKGEAGLDGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGL
DAPCPLGEDGLPVQGCWNK
NT seq 2220 nt   +upstreamnt  +downstreamnt
atggtggcggagcgcgcccgcaaagcggcagcctccagcaaccgcggccctggggatctg
ggcgcgccagggcccgggacagtggcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctggcgttgtgctcgctggcgctcagcctgctcgcccac
tttcggacggccgagctgcaggcccgggtgctgcgcctggaatcggagcgcggggaacag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttc
tactcgcgcaggcgcagggaggccccgaagatgtctccaggatgtaactgcccaccagga
ccgcctggccccactggaagacctggactcccaggggacaagggtgccatcgggatgcct
ggacgcgtgggtgtcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggata
tccatcatcgggccacgaggcccccctggccagccaggtacccgaggcttccctggattc
ccgggtcccattggtcttgacggcagaccgggccatcccggacctaaaggggagacgggc
ctggtgggtcctcgaggacaaccgggacctcagggacaaaagggagaaaagggtcagtgt
ggagaatacccacaccgggagtatccgagcggcacgctagcagctctgcgctccaacccg
ataatttccctgaagctgctgcctctcctcaattcagtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaagccaggctggcatccaaggccctccaggg
ccaccgggccccccaggaccaattggccctctgggacacccaggactgccagggcctata
gggccacctggtttacccgggcctcctggaccaaagggagacccagggatccagggctat
catggccgcaagggagagcggggcttgccaggaatgccaggcaagcatggagccaagggt
gctcctgggattgccgtggctgggatgaagggtgagccagggacgccaggagccaagggt
gagaagggtgctacaggctcccctggcctcctggggcagaagggagaaaagggagatgct
ggcaacgccattggaggaggcaggggagagcctggccccccggggctccctgggccccct
gggccaaagggagaagctggtgtcgatggacaggctggtcccccaggacagcaaggagac
aaggggcagccaggagcagctggcgaaccgggaccaactggccccaagggttccaagggt
gaacccggcaagggagagatggtggactacaacagcagcatcaacgaggctcttcaggag
atcaggacgctggccttgatggggcctcctggtcttcctggacaaacaggcccacccgga
cctccagggactccaggccaaaggggggagattggattgccaggccctccaggacacgat
ggggacaaggggcctcgaggaaaaccaggagatatggggcctgctggtcctcaaggaccc
ccaggaaaggacgggcctccaggaatgaagggagaggttggacctccaggaaatccaggg
gagaaaggggagacaggacaagcaggccccccgggtctagacggcccaactggggagaaa
ggagaaccaggtgatgaagggaggcctggagcgacaggattgcctgggcccatcgggctc
ccgggattcacaggagagaaaggagaggctggggagaaaggtgacccaggagcagaggtg
cctgggccgccagggccagagggtcctccaggaccgccgggcctccaaggtattccagga
ccaaagggagaagcaggcctagatggcagtaaaggagagaagggctcccagggagaaaaa
ggagaccgggggcctctgggattgcctggtactccaggaccaatcggggttccaggccca
gccggaccaaagggcgaaaggggcagcaagggagacccagggatgacgggaccaacagga
gcagctgggctgcctggtttacacggaccacccggggacaaaggaaaccggggggagagg
gggaagaagggctctagagggcctaaaggggacaagggggaccaaggagcacctggacta
gacgccccctgcccactgggagaagatggcttaccagtccaaggctgctggaacaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system