KEGG   Rattus norvegicus (rat): 499691
Entry
499691            CDS       T01003                                 
Symbol
Prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    499691 (Prpf38b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    499691 (Prpf38b)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    499691 (Prpf38b)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    499691 (Prpf38b)
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 499691
NCBI-ProteinID: NP_001019476
RGD: 1562940
Ensembl: ENSRNOG00000020438
UniProt: Q6AXY7 A6HV34
Position
2:complement(199241312..199250342)
AA seq 542 aa
MANNSPALTGNSQPQHQAAAAVVQQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNP
MILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVG
TGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFES
FLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKI
KKDGKEGVEEIDRHIERRRSRSPRRSLSPRRSPRRSRSRSHHRDGHGSSSFDRELEREKE
RQRLEREAKEREKERRRSRSLDRGLDRRRSRSRERHRSRSRSRDRKGDRRDRDREREKEN
ERGRRRDRDYDKDRGNDRERDRERSRERSKEQRSRGEGEEKKHKEDKEDRRHRDDKKESK
KKHSRSRSRERKHRSRSRSRNAGKRSRSRSKDKASKHKNESKEKSNKRSRSGSQGRTGSV
EKRKREHSPSREKSRKRSRSQDRSHKRDHDSKDQSDRQDHQRSQSVEPESQEKEHKNKDE
TV
NT seq 1629 nt   +upstreamnt  +downstreamnt
atggctaacaacagccccgcgctgaccggcaactcgcaaccgcagcaccaggcggctgcg
gccgtggtccagcagcagcagcagtgtggcggcggcggcgccaccaagccggcggtgtcg
ggcaagcagggcaatgtgctgccgctgtggggcaatgagaagaccatgaacctcaacccc
atgatcctcaccaacatcctgtcgtcgccttacttcaaagtgcagctctacgagctcaag
acctaccacgaggtggtggacgagatctactttaaggtcacgcatgttgagccatgggag
aaggggagcaggaaaactgctggccagacggggatgtgcggaggggttcgaggcgttgga
acaggaggcattgtttctacggcattttgcctcctgtacaaattatttaccctgaagtta
actcgaaagcaagtgatgggtctcataacacatacagactctccatatatcagagccctt
ggatttatgtatataaggtatacacaaccccctacagacctgtgggactggttcgagtcc
ttccttgatgatgaggaggacctagatgtgaaagctggtggaggctgtgtaatgaccatt
ggagagatgcttcgttcttttctcacaaagctcgagtggttttctactttgtttccaaga
attccagttccagttcagaagaatattgatcagcagattaaaactcgacctaggaaaatc
aagaaagacggaaaggaaggtgttgaggaaatagacagacatattgagagacggcggtcc
agatctccaagaagatcactgagcccacggaggtctccaagaagatcaagaagcagaagt
catcaccgggacggtcatggatcttctagtttcgacagagaattagagagagagaaagaa
cgccaacgactagagcgggaagccaaagagagagagaaagaaaggcgaagatctcgaagc
cttgatcggggcttagaccgcaggcggagccgcagtcgggagaggcacagaagtcgcagt
cgcagtcgtgataggaaaggggatagaagagacagggatcgggaaagagagaaagaaaat
gagagaggtcgaagacgagaccgggattatgataaggatagaggcaatgaccgagaaagg
gacagggagagatcaagagagcgctccaaggagcaaagaagtaggggtgagggagaagag
aaaaagcacaaagaagacaaggaggacagacgacacagagatgacaaaaaagagtccaag
aaaaaacacagcagaagtagaagcagagagaggaaacacagaagtaggagtagaagcaga
aatgcagggaagcggagcaggagcaggagcaaggacaaggcaagcaaacataaaaacgaa
agcaaggagaagtcaaataaaagaagcagaagtggcagtcaaggaagaactggcagtgtt
gagaagagaaaacgagaacacagccctagcagagagaagtctagaaagcgcagcaggagc
caagaccgttcccacaagagagatcatgatagcaaggaccagtcagacagacaggatcat
cagagaagccagagtgtagagccagaaagccaagaaaaagaacataaaaacaaagatgag
actgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (17)   
   RefSeq(nuc) (7)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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