KEGG   Rattus norvegicus (rat): 499697
Entry
499697            CDS       T01003                                 
Symbol
Trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
  KO
K15446  tRNA:m4X modification enzyme [EC:2.1.1.225]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    499697 (Trmt13)
Enzymes [BR:rno01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.225  tRNA:m4X modification enzyme
     499697 (Trmt13)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    499697 (Trmt13)
SSDB
Motif
Pfam: TRM13 zf-TRM13_CCCH zf-U11-48K Methyltransf_32
Other DBs
NCBI-GeneID: 499697
NCBI-ProteinID: NP_001029074
RGD: 1565211
Ensembl: ENSRNOG00000015140
UniProt: B2GV29
Position
2:complement(207217399..207232467)
AA seq 495 aa
MEAPAPTTPAIGFPTDGRCNYFVEKKKRFCRMVVAAGKRFCGEHAGSAEEENARKRILCP
LDPKHTVYEDQLAKHLKKCNSREKPKPDFFIQDINAGLKDETEILEQLVPLSSLSEEQLE
TLIKKLRKASEGLNSTHEDHIMSHPALHDALNDPRNGDCAVKHLKQQASILGNIEKLKLL
GPRRCFVEFGAGKGKLSHWVDIALKDAENVHFILVEKVTTRFKVDGKHRKKNSVFERLQI
DIQHLCLNRLPVLREGRLPVVGIGKHLCGVATDLALRCLVETYAASFKEKDEEPLAKRVK
NDKTEKESNTLAKEGSEKDVPETRTPVAGIVIALCCHHRCDWRHYVGKEYFKALGLGAVE
FYYFQRMSSWATCGMRTSLEASDVTAERKDAQKDEEEEHDDVGDRLTDGSTDSLPGTLTV
EEKKKIGHLCKLLIDQGRLQYLQQKGFSPALQYYTDPLVSLENVLLTAVPAHLSSQEKNQ
SVKGNMNMMSSTSKK
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggaggctcctgctccgacaacgcccgcgatcggttttccaactgacggtagatgcaac
tactttgtggaaaagaagaagcgcttctgcaggatggtggtggccgcggggaaaaggttc
tgtggtgaacacgctggatcggcggaggaagaaaatgctcggaaaagaatcttatgtcct
ttagatccaaaacacacagtatatgaagaccaactagcaaaacatttgaaaaaatgtaat
tcaagagagaagcctaagcctgatttctttattcaagatataaatgcaggattaaaggat
gaaacagaaattcttgaacaattagttccactttcttctctatctgaggagcagttggaa
accttaattaagaaattgagaaaagcaagtgaaggcttgaactctacacatgaagatcac
attatgtcccatccagcattacacgacgcccttaatgacccgagaaatggtgattgtgca
gtcaagcacctgaaacagcaggcttctattttaggtaacattgaaaaattaaagttactt
ggtccaagaagatgctttgttgagtttggagcaggaaaggggaaattatctcactgggtt
gatattgccttaaaagatgctgaaaacgttcacttcatcctggtagaaaaagtgaccaca
agattcaaggtagatggtaaacacagaaaaaagaactcagtgtttgaaagacttcaaatt
gatatccaacacttgtgcttgaacaggcttcctgtgctaagagaaggaagactgcctgta
gtaggaattgggaagcacctgtgtggggtggcaacagatcttgcattacgatgtttggtt
gaaacctatgctgccagttttaaggaaaaggatgaagaacctttagccaaacgcgtaaag
aatgataaaacagaaaaagaaagtaacactttggccaaggaaggaagtgaaaaagatgtc
ccagagacacggacccctgtggctggcattgtcattgcgctctgttgtcaccacaggtgt
gactggagacattatgtgggcaaagagtatttcaaggctcttgggcttggcgcagtggag
ttctactatttccagagaatgagtagttgggcaacgtgtgggatgaggacgtctttggaa
gcctcagatgttactgcagagagaaaagatgctcagaaggatgaggaggaagagcacgat
gatgtaggagacagactcacggatggcagcactgacagtttgcctgggactcttactgtt
gaagaaaagaagaaaataggacatctttgcaaattgctgattgaccaaggccgactccag
tatttacagcagaaaggcttcagtcctgccttacagtactatacggacccattggtgtct
ctggaaaatgtattattaactgctgtaccggctcatctgtcatcgcaggaaaaaaatcaa
tcagtgaaaggaaacatgaacatgatgtcttccacaagcaaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (18)   
   RefSeq(nuc) (12)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (44)   

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