KEGG   Rattus norvegicus (rat): 499801
Entry
499801            CDS       T01003                                 
Symbol
Ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
  KO
K12647  interferon-induced helicase C domain-containing protein 1 [EC:5.6.2.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04622  RIG-I-like receptor signaling pathway
rno05161  Hepatitis B
rno05162  Measles
rno05164  Influenza A
rno05168  Herpes simplex virus 1 infection
rno05171  Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    499801 (Ifih1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05161 Hepatitis B
    499801 (Ifih1)
   05171 Coronavirus disease - COVID-19
    499801 (Ifih1)
   05164 Influenza A
    499801 (Ifih1)
   05162 Measles
    499801 (Ifih1)
   05168 Herpes simplex virus 1 infection
    499801 (Ifih1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:rno04054]
    499801 (Ifih1)
Pattern recognition receptors [BR:rno04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   499801 (Ifih1)
SSDB
Motif
Pfam: CARD_2 RIG-I_C-RD RIG-I_C ResIII Helicase_C DEAD CARD SWI2_SNF2 SNF2-rel_dom DUF3638 MoCF_biosynth
Other DBs
NCBI-GeneID: 499801
NCBI-ProteinID: NP_001102669
RGD: 1560496
Ensembl: ENSRNOG00000006227
UniProt: A6HLW0 G3V6W5
Position
3:complement(67635924..67683968)
AA seq 1027 aa
MSTVCSAEDSFRNLISIFRPRVKMNIQVEPVLDYLVFLPAETKEQILRKVTTCGNTSAAE
LLLSTLEQGQWPLGWTQMFVEALEHSGNPLAARYVKPSLTDLPSPSSETAHDECLHLLNL
LQPTLVGKLLINDVLDTCSEKGLVTVEDRNRISAAGNSGNESGVRELLRRIVQKENWFST
FLDVLRQTGNDALVQELTGVSCPEESTDLDNASHKDRPAANEPLLPAIDALSLETEAWTI
EDTSPEASFADSSVTTESDTSLAEGSVSCFDESLGHNSNMGRDSGTMGSDSDEDTIMGTK
RASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQACESGK
VIVLVNKVMLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILE
NSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPT
IHLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLSQLKHQIKEPCKK
FVIADDTRENPFKEKLLEIMASIQTYCQKSPLSDFGTQHYEQWAIQMEKKAAKDGNRRDR
VCAEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAALNDSDESDDDEASSCHDQ
LKGNVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEES
SRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKF
RTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGS
GVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIARQYNS
DPSLITLLCKNCSTLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQMKFADYQTNG
EIICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSSKKQYKKWVELPIRFPDLDCSEY
CLYSDED
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgtcgaccgtctgttctgcagaggacagcttcaggaatctcatctcaatcttcaggccc
agggtgaaaatgaacattcaggtggagccggtgctggactacctcgtctttctgccggca
gaaaccaaagagcagattcttagaaaggtcaccacctgtggtaacaccagcgccgcagaa
ctgctgctgagcaccttggagcagggacagtggccgctgggatggacgcagatgttcgtc
gaggccctggagcacagtggcaaccctctagccgcgcgctatgtcaaacccagtcttact
gatctgccctctccttcctctgagaccgcccatgatgagtgtctccacttgctgaacctc
ctccagcccactttagtgggcaagctcctgattaatgatgtcttggatacttgctccgag
aagggactggtgacagtcgaggacagaaatcggatttctgctgcgggaaatagtgggaat
gagtcaggagtaagagaactgctgagaaggatagtgcagaaagaaaactggttttctacc
ttcctggatgttcttcgccaaactggaaacgatgcgctagtccaagagctaacaggtgtg
agctgcccagaagagagcacagacttggataacgcatctcacaaagacaggcctgcagct
aacgagccccttctgcccgccatcgatgcattaagtctggagacagaggcctggaccata
gaggacacctcaccagaggcttcctttgcagattcttctgtgaccacagaatcagacaca
agtttggcagaaggaagtgtcagctgcttcgatgaaagtcttggacataacagcaacatg
ggcagggattcaggcaccatgggaagtgattcagatgaagataccatcatggggacaaaa
agagcatcccccaagccagaactgcagctcaggccttaccaaatggaagtggcccagcct
gccctggatgggaagaatattattatctgcctccccacggggagcgggaaaaccagagtg
gcagtttacatcaccaaagatcacttagacaagaagaagcaggcgtgtgaatccgggaag
gttatcgtccttgtcaataaggtaatgttagcagaacaacttttccgcaaagagttcaac
ccgttcttgaagaaatggtatcgcattattggattaagcggcgatacccagctgaaaata
tcttttccagaagttgtcaaatcttacgatgttattatcagcacagctcaaatccttgaa
aactccctcttaaatctggagagtggggaagatgatggtgtgcagctgtcagacttttcc
cttattatcattgacgagtgtcatcataccaacaaggaggcagtctataacaacatcatg
agacggtatttgaagcagaagttgaaaaaccataaactcaagaaacaaaacaaaccaaca
attcacctgcctcagatactaggactgacagcttcaccgggtgttggagcagccaaaaag
caatctgaggctgaaaaacatattttaaatatatgtgccaatctcgatgcctttaccatt
aaaacagtgaaagagaatctcagtcaactcaaacaccaaataaaggaaccatgcaagaag
tttgtgattgctgatgacaccagagagaatccatttaaagagaaacttctagaaattatg
gcaagcattcaaacttactgccaaaagagtccattgtcagattttggaacccaacattat
gagcagtgggctattcaaatggaaaaaaaagctgctaaagacggaaatcgcagagatcgt
gtctgtgcagaacatttgaggaagtacaacgaagccctacaaatcaatgacacgatccga
atgattgacgcgtacagccacctggaaacgttctacaccgacgagaaagaaaagaagttt
gcagccctcaatgacagcgatgagagtgacgacgacgaggccagcagttgccatgaccaa
cttaagggcaatgtaaagaaatctttgaaactggacgaaacggatgaatttctcatgaat
ttgttcttcgataacaagaaaatgttgaaaaaactagctgaaaacccaaagtacgagaac
gaaaaactcattaaattaagaaacacgatcctggaacagttcacaaggtctgaggagtcc
tcccgaggaattattttcacaaaaacgcggcagagcacctatgcgctttcccagtggatt
atggagaatgaaaagtttgcggaagttggagtcaaagcgcatcacctgattggcgcggga
cacagcagcgaggtcaagcccatgactcagactgaacaaaaagaagtcattagtaaattt
cgcactggggaaataaatctgcttatcgctactacggtggcagaggaaggcctggatatc
aaagaatgcaatatcgttatccggtatggccttgtcacgaacgagatagccatggtccag
gcccggggtcgagctagagccgatgagagcacctacgtcctggttaccagcagtggctcg
ggagttactgaacgggagattgttaatgatttccgagagaagatgatgtataaagctatt
aaccgtgttcaaaatatgaaaccagaggagtatgcacataagattttggaattacaagtg
caaagtatcttggaaaagaagatgaaagtcaagagaagtattgcgaggcagtacaacagc
gatccatcgttaataacacttctctgcaaaaactgtagtacgctggtctgctcaggagaa
aacatccacgtaattgagaagatgcatcatgtcaacatgacaccagagttcaagggactc
tacattgtgagagagaacaaagcactacaaatgaaatttgctgattatcagacaaatgga
gagattatctgcaaatgtggccaagcttggggaacaatgatggtgcacaaaggtttagat
ttgccttgtcttaaaataaggaattttgtagtcaatttcaaaaataactcatcaaagaaa
cagtacaagaagtgggtggaattgcctatcagatttcctgatctcgattgctcagagtac
tgcttgtatagtgatgaagactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (37)   

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