KEGG   Rattus norvegicus (rat): 499974
Entry
499974            CDS       T01003                                 
Symbol
Nup42
Name
(RefSeq) nucleoporin NUP42
  KO
K14321  nucleoporin-like protein 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    499974 (Nup42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    499974 (Nup42)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     499974 (Nup42)
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH_4 zf-CCCH zf-CCCH_2 JetA
Other DBs
NCBI-GeneID: 499974
NCBI-ProteinID: NP_001102687
RGD: 1560934
Ensembl: ENSRNOG00000010435
UniProt: A6K571 D3ZHV0
Position
4:complement(11877957..11894991)
AA seq 418 aa
MTICQFFLQGRCRFGDRCWNEHPGARGAAGARQPPPQQQPPSGGNRRGWNAGSQRYSNVI
QPSSFSKSTPWGGSRGQDKPPFGPFDSGASTSRGFGSPQNPFASPLSDEQKDEKKLLEGI
VKDVEVWESSGQWMFSVYSPVRKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQQ
LVNQWRSRINELKNLNMSTKGALLSDLKDAVSQAAPAFGFGSKQAGTFGSPGFPVNNSSS
TTVQSFSFKTSPGLATAPSGNTSVFGSHPAFGAGPSAGSAVSSSIPAFGLGKPEATSAAS
FSFKSPEASSFGSPGFSGFPAPMATSPFGPATAPAFGSSVAAFGSPSPHSQTVFAKPCTD
VFGGSSISSSVPASSAPDNALFTPRDQLTKEELEQFQSQKFTLGKIPLKPPPVELLTV
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgaccatttgccagtttttccttcaaggccggtgccgcttcggagaccgctgctggaac
gagcatcccggcgcccggggtgcggccggggcccggcagccgccaccacagcagcagccg
ccctcagggggtaaccgtcgggggtggaatgcaggcagccagaggtactccaatgtcatc
cagccgtccagtttctccaagagcacgccctggggtggcagcagaggtcaggacaaaccg
cccttcggcccttttgattctggagcttctaccagcagaggctttgggtcacctcaaaac
ccttttgcctcacctctctctgatgagcagaaagatgaaaagaaacttctggaaggaatt
gttaaggacgtagaggtttgggagtcttcagggcagtggatgttttctgtttactcacca
gtgagaaagaaacccaacatttcaggtttcacagacatttcaccagaagagttgaggctt
gagtaccataacttcttaaccagcaacaacttgcagagctatctaaactctgttcaacag
ctagtaaatcagtggaggagtaggataaatgaactgaaaaatctaaatatgtcgaccaaa
ggagctctgctctctgacttaaaggatgcagtcagtcaagcagcacctgcgtttggattt
ggaagcaagcaagcagggacatttgggtcaccaggttttccggtgaataacagcagcagc
actactgttcagagcttcagttttaaaacaagccctggactggccactgctccttctgga
aacacctcggtgtttggaagtcacccagcctttggggctgggccctctgctggctctgct
gtctcgtcctccattccagcctttggacttgggaaacctgaagccacatctgctgcgtca
ttttcattcaagagccctgaagcttccagctttggatcgcctgggttttcaggatttcca
gctcccatggcaacaagtccctttggccctgccacagcccctgcctttggaagttctgtg
gctgctttcggcagtcctagcccacattctcagactgtgtttgccaagccttgcactgac
gtgtttggaggtagcagcatatctagctctgtcccagcttccagtgccccggataacgcg
ctgttcacacccagggatcagctgacgaaggaagaactggaacagtttcagtcccagaaa
tttaccctggggaaaatcccactgaagccgccacctgttgagcttctgactgtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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