KEGG   Rattus norvegicus (rat): 500305
Entry
500305            CDS       T01003                                 
Symbol
Dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X2
  KO
K12611  mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    500305 (Dcp1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    500305 (Dcp1b)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     500305 (Dcp1b)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     500305 (Dcp1b)
SSDB
Motif
Pfam: DCP1 mRNA_decap_C WH1
Other DBs
NCBI-GeneID: 500305
NCBI-ProteinID: XP_003749869
RGD: 1562214
Ensembl: ENSRNOG00000007340
Position
4:154030181..154068038
AA seq 549 aa
MAAAAAGGLPGKGHDISLAALRRHDPYINRIVDVASQVALYTFGHRANEWEKTGVEGTLF
VYTRSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNGTLSIYGIWFYDKEEC
QRIAKLMKNLTQCEQLKACHGAGAGSSPVTLSSGEGREVDILQMLTKAKDEYTKCRSCSE
PKQMTSSSAICDNPKLIKPVPVRPSSSQRLHEPTPSKTLDPEPQHLPLTALFGKQDKAPC
QETVKPSRTFAHHHHHHHHHQQQEKLPVHHGVACSLACEDPRKLSLPVEKQLCPAIQKLM
VGSMGLHSLPQHPGQWPCESGSPSPAGGILPGPVQLGAPWNGRAAHCTQSTCRSHKLLEQ
LQGAPAAVHKYSFCAPASPAVTTQVAPGQSVAQSQLVYFSGPLPPPTPGHQALGKEQCAP
PAQAVSLSGSQESSPTVLPTQELLRKLQVVQQEQQAAPRPALAARFPVSAQGSGTEKPLE
AWVSKTASMEKQAPLLQNWESSTMASRPLTRLQLQEALLNLIQNDDNFLSIIYEAYLFSV
TQAAMRKAT
NT seq 1650 nt   +upstreamnt  +downstreamnt
atggcggccgcggcggcaggtggcctgcctgggaagggacacgatatcagcctggcagcc
ctgcggcgccacgacccctacatcaatcgcatcgtggacgttgccagccaggtggctctg
tacactttcggccatcgggccaacgagtgggagaagactggtgtggaaggaaccttattt
gtttatacaaggtctgcctctccgaagcacggattcaccattatgaataggctcagcatg
gaaaacagaacagagcccattactaaagacttggacttccagctccaggaccctttcctt
ctctacagaaatggcacactgtccatttatggaatttggttttatgataaggaagagtgc
cagagaattgcaaaactaatgaaaaacctcactcagtgtgaacagttgaaagcctgtcat
ggagctggagcaggatcctccccagtgaccttgagttcaggagagggccgagaagtagat
atcctgcagatgctcaccaaggccaaagatgagtacaccaagtgtaggagctgttctgag
ccaaagcagatgaccagttcttctgccatctgtgacaaccccaagctcatcaaacctgtc
cccgtgagacccagcagcagccagaggctgcacgaacccacgcccagcaagaccttggac
cctgagcctcaacacttacctttgacagcgctatttgggaaacaagacaaagccccttgt
caggaaactgtgaaaccatcccggacctttgcccaccaccatcaccatcaccaccaccac
cagcagcaagagaagcttccagttcatcacggggttgcatgctccctggcctgtgaggat
cccaggaagctctcactcccagtggagaagcagctatgcccagccattcagaaactcatg
gttgggagcatggggctgcactccctgccacagcaccctggacagtggccctgtgaaagt
ggcagccccagccctgcagggggaattcttcctggtcctgtccagctgggggccccctgg
aatggtagggctgcacactgtacacagagcacttgcagaagccacaagctgttagagcag
cttcaaggtgcccctgccgcagtacataagtatagcttctgtgcacctgccagtccagcc
gtgaccactcaggtggctccaggccagagtgtggcccagtcacagctggtgtatttcagt
ggcccccttccacctcccacgccaggacatcaggctctcgggaaggagcagtgtgcacca
ccagcacaagcggtgtcgctctctggcagccaggagagcagccccactgtgctccctact
caggagctgctaagaaagctccaggtagtacaacaggagcagcaggcagccccccggcca
gccttggcagccaggttccctgtgtcagcccagggatcagggacagaaaagcccttggaa
gcctgggtcagcaagacagccagcatggagaaacaggctcctcttctgcagaactgggaa
tcctccaccatggccagcaggcccctcaccaggctgcagctccaggaggcactgctgaac
ctcatccagaatgacgacaacttcttaagcataatctacgaagcctatctcttcagcgtg
acacaagccgccatgagaaaagccacgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system