KEGG   Rattus norvegicus (rat): 500569
Entry
500569            CDS       T01003                                 
Symbol
Kdm1a
Name
(RefSeq) lysine-specific histone demethylase 1A
  KO
K11450  [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04714  Thermogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    500569 (Kdm1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    500569 (Kdm1a)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.99  Miscellaneous
    1.14.99.66  [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
     500569 (Kdm1a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    BRAF-HDAC complex
     500569 (Kdm1a)
    REST complex
     500569 (Kdm1a)
   Histone demethylases
    500569 (Kdm1a)
SSDB
Motif
Pfam: Amino_oxidase SWIRM NAD_binding_8 DAO Pyr_redox_2 AlaDh_PNT_C Pyr_redox FAD_binding_2 FAD_oxidored HI0933_like FAD_binding_3 Thi4 GIDA MutS_IV 2-Hacid_dh_C Sec10_N Lycopene_cycl Pyr_redox_3
Other DBs
NCBI-GeneID: 500569
NCBI-ProteinID: NP_001123570
RGD: 1562975
Ensembl: ENSRNOG00000022372
UniProt: B3STT9
Position
5:complement(154066436..154121913)
AA seq 872 aa
MLSGKKAAAAAAAAAAAAAGTEAGPGAAGGAENGSEVAAPPAGLAGPADIATGAAGERTP
RKKEPPRASPPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAETPEGRRTSRRKRAKVEY
REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQD
DSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQL
WLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPIKKTGK
VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
PMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNV
LNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQ
QYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVY
LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAE
GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFV
PPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA
PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGS
YSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLR
EAGRIADQFLGAMYTLPRQATPGVPAQQSPSM
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgttgtctgggaagaaggcggcggcggcggcagcggcggcggcggcagcagcggctggg
acagaggccgggcccggggcggcgggcggcgccgagaacggctctgaggtggccgcgccg
cccgcgggcctggcgggccccgccgacattgctacgggggcggcgggcgagcgcactccc
cgaaagaaggagcctccgcgggcctcgccgcccggaggcctggccgagccgcctgggtcc
gccgggcctcaggcggggcccacagccgggcccggctccgctacacccatggagacagga
atagccgagaccccggagggccgacggaccagccgacgcaagcgggcgaaggtagaatac
agagaaatggatgaaagcttggccaacctctcagaagatgaatattattcagaagaagaa
agaaatgccaaagcagagaaggagaagaagcttcccccgccacctcctcaagccccacct
gaggaggaaaatgaaagtgagcccgaggagccgtctgggcaagcaggaggacttcaagac
gacagttctggagggtatggagacggccaagcatcaggtgtggagggtgcagctttccaa
agcagacttccccatgaccgaatgacctctcaggaagcagcgtgtttcccagacatcatc
agtgggcctcagcagacacagaaggtttttctgttcatcaggaatcgcacattgcagtta
tggttggacaacccaaagattcagctgacatttgaagctacgctccagcagttagaagca
ccttataacagtgacactgtacttgtccaccgagttcatagttacttagagcgccacggt
cttatcaacttcggcatctacaagaggataaaacctttaccaattaaaaagacaggaaag
gtgattattataggctcaggtgtttctggcttggcagcagctcgacaactacagagtttt
gggatggatgtcacacttctggaagccagggatcgcgtaggtggacgggtcgctacattt
cgaaaaggaaactatgtagctgatcttggagccatggtagtaacaggtcttggaggaaat
cccatggctgtcgtcagcaaacaagtaaatatggaactggccaagatcaagcaaaaatgc
ccactttatgaagccaatggacaagctgttccaaaagagaaagatgaaatggtagaacaa
gaatttaaccggttgcttgaagccacctcttaccttagtcatcagttagacttcaacgtc
ctcaataataaacctgtgtcccttggccaggcgttggaggttgtcattcagctacaagaa
aagcacgtcaaagatgagcagattgaacactggaagaagatagtgaaaactcaggaggaa
ttgaaagagcttctcaataagatggtaaacttgaaggagaaaattaaagagctccaccag
caatacaaagaagcttcagaagtgaagccgcccagagatattacagctgagttcctagtg
aaaagcaagcacagggacctgactgccctctgcaaggaatatgatgaattagctgaaaca
caaggaaagctagaagaaaaacttcaagaattggaagccaatcccccaagtgatgtatat
ctctcatcaagagacagacaaatacttgactggcattttgcaaatcttgaatttgccaac
gccacacctctctctaccctctctcttaaacattgggatcaggatgatgacttcgagttt
actggcagccacctgacagtgaggaatggctactcgtgtgtgcctgtggctttagctgaa
ggtttggacattaaactgaacacagcagtgcggcaggttcgctacacagcctcaggatgt
gaagtgattgctgtgaacacacgctccacaagtcagaccttcatttataagtgtgacgca
gtgctctgtacccttcctttgggagtgctgaagcagcagccaccagctgttcagtttgtg
ccgcctcttcctgagtggaaaacatccgcagtccaaaggatgggatttggcaaccttaac
aaggtggtgctatgttttgaccgtgtgttctgggatccaagtgtcaatttgtttgggcac
gttggcagtacaactgctagcaggggcgagctcttcctcttctggaacttatataaagct
ccaatactcttggctctggtagcaggcgaagctgctggcattatggagaacattagtgat
gatgtgattgtcggccggtgcctggccattctcaaagggatttttggcagcagtgcagta
ccacagcccaaggaaactgtggtgtctcgttggcgtgctgatccctgggcccggggctcc
tattcttatgtggctgcaggatcttctggaaatgactatgatttaatggctcagccaatc
actcctggtccctcaattccaggtgccccacagccaattccaagactcttctttgctgga
gaacatacaatccgcaactacccagctacggtccatggtgctctgctgagtgggcttcga
gaagcaggaaggattgccgaccagtttttgggagccatgtacacgttgcctcgtcaggcc
acaccgggtgtccctgcacagcagtccccaagtatgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (37)   

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