KEGG   Rattus norvegicus (rat): 500988
Entry
500988            CDS       T01003                                 
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    500988 (Ddx6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    500988 (Ddx6)
   03036 Chromosome and associated proteins [BR:rno03036]
    500988 (Ddx6)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     500988 (Ddx6)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     500988 (Ddx6)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    500988 (Ddx6)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 500988
NCBI-ProteinID: NP_001102762
RGD: 1564560
Ensembl: ENSRNOG00000053932
UniProt: D3ZD73 A6J406
Position
8:53827661..53864538
AA seq 483 aa
MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQ
SMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAED
EKP
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgagcacggccaggacagagaaccctgttatcatgggtctgtccagtcagaacggccag
ctgaggggccctgtgaaggccagtgccggccctggaggagggggcccacagacacagaca
cagatgaaccagttgaagaacaccagcacaatcaataatggcactcagcagcaagcacag
agcatggccgccaccattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaattaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaacggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcgaccact
ggaggaaccaatttacgggatgacataatgaggcttgacgatacagtgcatgtggtgatt
gctacccctggcagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataagttgttgtcacaggactttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatattccgctactttc
cctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctacgagataaacctg
atggaggagctaactctgaaaggggtgacccagtactacgcatatgtaacggagcgccaa
aaagtgcactgcctcaatacactcttctccaggcttcagataaaccagtcgatcattttc
tgcaactcttctcagagagttgagttactggccaagaagatttctcagctgggttactct
tgcttctatatccatgctaaaatgaggcaggaacatagaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatcttcat
cggattggaaggtcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaagagtattgaggagcagctggggacagagatcaaacccatc
ccaagcaacattgacaagagcctgtatgtggcagaataccacagtgagcctgcagaagat
gagaaaccttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   RefSeq(pep) (7)   
DNA sequence (15)   
   RefSeq(nuc) (7)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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