KEGG   Rattus norvegicus (rat): 501083
Entry
501083            CDS       T01003                                 
Symbol
Pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein
  KO
K12200  programmed cell death 6-interacting protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
rno04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    501083 (Pdcd6ip)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    501083 (Pdcd6ip)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    501083 (Pdcd6ip)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    501083 (Pdcd6ip)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT associated proteins
    501083 (Pdcd6ip)
Exosome [BR:rno04147]
 Exosomal proteins
  Proteins found in most exosomes
   501083 (Pdcd6ip)
SSDB
Motif
Pfam: BRO1 ALIX_LYPXL_bnd AAT Ly49 TINF2_N
Other DBs
NCBI-GeneID: 501083
NCBI-ProteinID: NP_001025081
RGD: 68357
Ensembl: ENSRNOG00000008981
UniProt: A0A140TAA4 A6I3M1
Position
8:complement(122469223..122524993)
AA seq 868 aa
MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK
HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK
SCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDIS
PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDALPKE
VFPTLAAKQCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDF
SDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKPTPVNVPISQKFTDLFEKMVP
VSVQQSLAVFSQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK
STAVVEQGGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATDNDLRAKFKDRWQRTP
SNDLYKPLRAEGAKFRAVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPA
KTMQGSEVVNVLKSLLSNLDEIKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS
VTELDRIYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNSEASLREEVLKNLATAY
DNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAP
SIPPPAYQSSPAGGHATAPTPAPRTMPPAKPQPPARPPPPVLPANRVPPAAAATAPAGVG
TASAAPPQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYTYGQYNMPYPPVYHQS
PGQAPYPGPQQPTYPFPQPPQQSYYPQQ
NT seq 2607 nt   +upstreamnt  +downstreamnt
atggcgtcgttcatctgggtgcagctgaagaagacctcggaggtggacctggccaagccg
ctggtcaagttcatccagcagacgtacccgagcggcggcgaggagcaggcccagtactgc
cgcgcggccgaggagctcagcaagctgcggcgctcggcgctcggccgcccgctggacaag
cacgagggcgcgctggagacgctgctgagatattatgaccagatttgttctattgaaccc
aagttcccattttctgaaaatcagatctgcttgacatttacgtggaaggatgcttttgat
aaaggttccctttttggaggatctgtaaaattggctcttgcaagcttaggatatgaaaag
agctgtgtgttgttcaactgtgctgccttagctagccagatcgcagcagagcagaacctg
gataatgatgaaggactgaaaaccgctgctaagcagtaccagtttgctagtggtgccttt
ttacatattaaagacacagttttatctgccttaagtcgagagcctactgtggacatatct
ccagatactgtggggaccctcagtcttattatgctggcccaagctcaagaagtatttttc
ttaaaagccacaagagataagatgaaggatgccatcatagcgaagctggccaatcaggct
gccgattactttggcgatgctttcaaacagtgtcagtacaaagatgccctccccaaggag
gtattccctaccctggctgcaaagcagtgcatcatgcaggctaatgctgagtaccaccag
tccatcctggccaagcagcagaagaagtttggggaagagatcgcaaggttgcagcatgca
gcagaactgattaagaatgtggcctctcgctatgatgaatatgtcaatgtgaaggatttt
tctgacaaaatcaaccgtgccctggctgcagcaaagaaggataatgattttatttatcat
gaccgtgttccggaccttaaggatctggatcctattggcaaagccacgcttgtgaaaccc
actccagttaatgtacccatcagccagaagttcacggatttgtttgagaagatggtgcct
gtgtctgtgcagcagtccctggctgtgtttagtcagaggaaagctgacttggttaacaga
tcaatcgctcagatgagagaagctacaactttggcaaatggagtactggcttcccttaac
cttccagcagcaattgaagatgtgtctggagacactgtacctcagtctatacttaccaag
tccacagctgtagtcgagcagggaggcatccagactgtcgaccagctgataaaagagctg
cctgagctgctacaaagaaatagggaaatattagaggagtcactaagattgttggatgaa
gaagaagcaactgataatgacttaagagcaaaattcaaggaccggtggcaaaggactcca
tccaatgacctgtacaagcctttacgagcagagggagccaagttcagagccgttttagat
aaagcggtgcaagcggatggacaggtgaaggagcgctaccagtcccaccgagacaccatc
gcccttctgtgtaagccagagccggagctgaatgccgccatcccttctgctaacccagca
aagaccatgcagggcagtgaggttgtaaatgtcttaaaatccttattatcaaatcttgat
gaaataaagaaggaaagagagggtcttgagaatgacctgaagtcagtgaattttgacatg
acaagcaagtttttgacagctctggcccaagatggcgtgataaatgaggaggctctttct
gtcactgagctggatcggatctatggtgggctaacaactaaagttcaagagtctctgaag
aaacaggagggacttctaaaaaatatacaggtctcacaccaggaattctccaaaatgaag
cagtctaacagtgaggccagcctgagggaagaggtcctgaagaacttagcgaccgcgtac
gacaacttcgtggagctcgtagctaacttgaaagagggcacaaagttttacaatgagctg
actgaaatcctggtcaggttccagaacaaatgcagtgacatagtgtttgcacggaagacg
gaaagagatgagctcttgaaggatctgcagcagagcattgccagagagcccagcgctcct
tctatccctccgccagcatatcagtcctccccagcagggggacatgcgacagctccaact
ccagctccaagaaccatgccgcctgctaagccccagcctccagcccggcctccacctcct
gtgcttcctgcaaaccgagttcctcctgctgctgccgctactgcccctgcaggggtgggg
actgcttcagcagcaccgccacagacccctggctctgctccccctccacaggctcaggga
ccaccgtatcccacctatccaggatatcccgggtattgccaaatgcccatgcccatgggc
tacaacccctacacatatggccagtacaatatgccgtacccaccggtgtatcaccagagc
cctggacaggctccgtacccaggaccccagcagcctacctaccccttccctcagcccccg
cagcagtcatactatccacagcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (5)   
   Pfam (5)   
All databases (43)   

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