KEGG   Rattus norvegicus (rat): 50676
Entry
50676             CDS       T01003                                 
Symbol
Slc6a12
Name
(RefSeq) sodium- and chloride-dependent betaine transporter
  KO
K05045  solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04721  Synaptic vesicle cycle
rno04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    50676 (Slc6a12)
   04721 Synaptic vesicle cycle
    50676 (Slc6a12)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    50676 (Slc6a12)
Transporters [BR:rno02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   50676 (Slc6a12)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 50676
NCBI-ProteinID: NP_059031
RGD: 620255
Ensembl: ENSRNOG00000013547
UniProt: P48056 A6ILC6
Position
4:156257518..156275870
AA seq 628 aa
MSSGAWEERVSLSSMDRKVTVHEDGCPVVSWVPEEGEMMDQKDKDQVKDRGQWTNKMEFV
LSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVALGQYSSQGSVT
AWRKICPLLQGIGMASVVIESYLNIYYIIILAWALFYLFSSFTWELPWTTCTNSWNTEHC
VDFLNYSSTRAASYSENFTSPVMEFWERRVLGITSGIHDLGSLRWELALCLLLAWIICYF
CIWKGVKSTGKVVYFTATFPYLMLIILLIRGVTLPGAYQGIVFYLKPDLLRLKDPQVWMD
AGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIALCFLNSATSFVAGFVVFSILGFMAQ
EQGVPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFLMLLFLGLDSQFVCMECLVTA
SMDMFPQQLRKRGRRELLILAVAIVCYLMGLLLVTEGGMYIFQLFDYYASSGICLLFLSL
FEVICIGWVYGADRFYDNVEDMIGYRPWPLVKISWLFLTPGLCLATFFFSLSKYTPLKYN
NVYIYPSWGYSIGWLLAFSSMACVPLFIIITLLKTQGSFKKRLQRLITPDPSLPQPGRRS
PQDGSSAQNCSTSPVKQELIAWEKETHL
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgtcatcgggagcttgggaagaaagggtctccctctccagtatggacagaaaggttaca
gtccatgaagatgggtgtcctgtggtctcttgggtccctgaggagggagagatgatggac
cagaaagacaaggaccaggtgaaggatcgaggccaatggaccaacaagatggagttcgta
ctgtcagtggcgggagagatcattggcttaggcaacgtctggaggtttccctatctctgc
tacaagaacgggggaggagccttcttcatcccctacttcatcttcttcttcagctgtggt
atcccagtgttcttcctggaggtggcactgggtcagtatagcagccaggggagtgttact
gcttggaggaagatctgtccccttctccaaggcattggcatggcatctgtggtcatcgag
tcttatttgaacatctactacatcatcatccttgcctgggctctcttctacctgttcagc
tccttcacctgggagcttccctggacaacctgcaccaactcctggaacacagaacattgc
gtggactttctgaactactcatcgaccagagccgcaagctactctgagaacttcacctca
ccagtcatggaattctgggagagacgggttttgggtattacatcaggcatccatgacctg
gggtccctgcgctgggagctggccctgtgcctcctgctcgcctggatcatctgctacttc
tgcatctggaagggagtcaagtccacgggcaaggttgtttacttcacagccacttttccc
tacctgatgctgattattcttctgatccggggtgttacccttcctggagcctaccagggc
atcgtcttctacctgaagccagacttgctccgcctcaaggacccccaggtgtggatggat
gcgggcacccagatcttcttttcctttgccatctgccaggggtgcctcacggccctgggc
agctacaacaagtaccacaacaactgctacagggactccatcgccctctgcttcctgaac
agtgccaccagcttcgtggctggttttgttgtcttctccatcctgggcttcatggctcag
gagcagggcgtgcccatttctgaagtggctgagtcaggtcctggactggctttcattgcc
ttccccaaagcagtgacgatgatgcctttgtcccagctgtggtcctgcctcttcttcctc
atgctcctatttctagggctggacagccagttcgtctgtatggagtgcctggtcactgct
tccatggatatgtttcctcagcagctccgaaagagaggccggcgcgagctgctgatcctc
gcagttgctatcgtgtgctacttgatggggctccttctggtcactgagggtgggatgtac
attttccagctctttgactactacgcctccagcggaatatgcctactcttcctctccttg
tttgaggtcatctgcattggctgggtgtacggggcggatcgtttctatgacaacgtggag
gacatgattggctatcggccatggcccttggtgaagatctcttggctcttcctgacccct
ggtctttgcctggccaccttcttcttctccttgagcaagtatacacctctcaaatacaac
aatgtctacatatacccttcttggggatactccattggatggctcttggctttttcctcc
atggcctgtgtaccgctctttattatcatcaccctcctgaagacccagggctccttcaag
aagcgccttcaaagactcatcacgccagatcccagtctgccccagccagggaggcgttca
cctcaggatggctcctctgctcaaaactgttcgacctctccagtcaagcaagaactcatt
gcctgggagaaggagacgcatttgtag

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