KEGG   Rattus norvegicus (rat): 53372
Entry
53372             CDS       T01003                                 
Symbol
Nup54
Name
(RefSeq) nuclear pore complex protein Nup54
  KO
K14308  nuclear pore complex protein Nup54
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    53372 (Nup54)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    53372 (Nup54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    53372 (Nup54)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     53372 (Nup54)
SSDB
Motif
Pfam: Nup54 Nup54_C XhlA
Other DBs
NCBI-GeneID: 53372
NCBI-ProteinID: NP_059057
RGD: 619926
Ensembl: ENSRNOG00000002247
UniProt: P70582 A6KK71
Structure
Position
14:15901936..15920335
AA seq 510 aa
MAFNFGAPSGTSGTSTATAAPAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKG
FGFGTGFGTSTGTGTGLGTGLGTGLGFGGFNTQQQQQQQQTSLGGLFSQPAQAPAQSNQL
INTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVG
YSCMPNNKDEDGLVVLIFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQ
TEVVIYIVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLL
QNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISED
ISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQAEEEQLRVQLDTI
QGELNAPTQFKGRLNELMSQIRMQNHFGAVKSEEKYYIDADLLREIKQHLKQQQEGLSHL
ISIIKDDLEDIKLVEHGLNETIHSRGGVFS
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggcattcaattttggggctccttcgggcacttcgggcacctctacagccaccgcggca
ccggcgggcgggtttggcggatttggaacaacaactacaactgcaggctctgcattcagc
ttttctgccccaacaaacacaggcagtacaggccttctcggcggcactcagaacaaaggt
tttggctttggcactggttttggcacatcgacgggtactggcactggtttaggcactggc
ttgggaaccggacttggattcggaggatttaacacccagcagcagcagcagcagcagcag
acttctttaggcggtctcttcagtcagcctgcacaggcccctgcgcagtccaaccaactc
atcaacactgccagcgctctttctgctccaacgctattgggggatgagagagatgccatc
ttggcaaagtggaaccagttgcaggccttctggggaacaggaaaaggatatttcaataat
aacattcctccagtggagtttacacaggaaaaccccttttgccgatttaaggctgtcggt
tacagttgtatgcccaataacaaagatgaagatggactagtggttctaattttcaacaaa
aaagaaacagatattagaagccaacaacagcagttggtagaatcattgcataaagttctg
ggaggaaaccagaccctcactgtcaatgtggagggcattaagacactgcccgacgatcag
acagaagttgtcatttacattgttgagcgctctccaaatggcacctcgagaagagttcca
gcgacaacgctgtatgcccactttgagcaagccaacattaaaacacagcttcagcagctt
ggcgtgaccctttctatgaccagaacagagctgtctcctgctcagatcaagcagctccta
cagaaccctcctgctggtgttgatcccattatttgggaacaggccaaggtggataacccg
gattctgaaaaattaattcctgttccaatggtgggtttcaaagaattgcttcgaagactg
aaggttcaagaccagatgactaagcagcaccagaccagattagatatcatatctgaagat
attagtgaactgcaaaagaatcaaactacaactatggccaaaatagcacaatacaagagg
aaactgatggatctctcacacagaaccttacaggtcctaatcaagcaggaaatccagagg
aagagtggctatgccatccaggctgaggaagaacagttgcgggttcagctagatacgatt
caaggagagctgaatgcacccactcagttcaaaggtcgactgaatgaactgatgtcccag
atcaggatgcagaatcattttggagctgtgaaatctgaagaaaagtattacatagatgca
gacctattacgagagatcaagcagcatttgaaacagcaacaggaaggccttagccacctg
attagcatcataaaagacgacctggaagatatcaagctggtagagcatggactgaatgag
accatccacagcagaggcggggtctttagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
3D Structure (3)   
   PDB (3)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system