KEGG   Rattus norvegicus (rat): 54252
Entry
54252             CDS       T01003                                 
Symbol
Mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
  KO
K08285  midline 1 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    54252 (Mid1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    54252 (Mid1)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     54252 (Mid1)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    54252 (Mid1)
SSDB
Motif
Pfam: COS SPRY zf-B_box fn3 zf-RING_UBOX PRY zf-C3HC4_4 zf-C3HC4 zf-C3HC4_3 Pur_ac_phosph_N zf-RING_2 zf-C3HC4_2 zf-RING_5 NDNF U-box
Other DBs
NCBI-GeneID: 54252
NCBI-ProteinID: NP_075216
RGD: 2640
Ensembl: ENSRNOG00000003613
UniProt: P82458 A6K2D8
Position
X:complement(27678248..28053049)
AA seq 667 aa
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR
HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQ
FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED
EKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTELETL
LAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQERRQIIGTKIKEGKVMRLRKLAQQIA
NCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFD
TFALDFSREKKLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI
FTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLK
TNSQPFKLDPKSAHRKLKVSHDNLTVERDESSSKKSHTPERFTSQGSYGVAGNVFIDSGR
HYWEVVISGSTWYAIGLAYKSAPKHEWIGKNSASWALCRCNNNWVVRHNSKEIPIEPAPH
PRRVGILLDYDNGSIAFYDALNSIHLYTFDVALAQPVCPTFTVWNKCLTIITGLPIPDHL
DCTEQLP
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggaaacactggagtcggagctgacctgtcctatttgtctggagctttttgaggaccct
ctcctgcttccctgtgcacatagcctctgtttcaactgtgcccaccgcatcctggtctct
cactgtgccaccaacgagcctgtggagtccatcaacgccttccagtgccccacctgccgg
catgtcatcacgctcagccagcgaggtctagacgggctcaagcgcaacgtcaccttacaa
aacatcattgacaggtttcagaaagcatccgtgagtgggcccaattctcccagtgagacc
cgcagggagcgggcctttgacgccaacaccatgtcttctgccgagaaagttctctgccag
ttctgtgaccaggatcctgcccaggatgctgtgaagacctgtgttacttgcgaagtgtcc
tactgtgatgagtgcctgaaagccactcatccgaataagaagccctttacaggccatcgt
ctgattgagccaatcccggactcgcacatccgggggctaatgtgcttggagcatgaggat
gagaaggtgaatatgtactgtgtgaccgatgaccagttaatctgtgccttgtgtaaactg
gttgggcggcaccgcgatcatcaggtggcagctttgagtgagcgctatgacaaattgaag
caaaatttggagagtaatctcaccaatcttattaagagaaacacagaactggagaccctt
ttggctaaactcatccaaacttgtcaacatgttgaggtcaatgcatcccgtcaagaagcc
aagttgacagaggaatgtgatcttctcattgaaattattcaggaaagaagacaaattatt
ggaacaaagattaaagaaggcaaggtgatgaggctccgcaaattagctcagcagattgca
aactgtaaacaatgcattgaaaggtctgcatcactcatttcccaagcagaacactcactg
aaggagaatgaccatgcccgttttctacagacagcaaagaatatcactgagagagtctcc
atggcaactgcatcctcccaggtcctaattcctgaaatcaacctcaatgacacatttgac
acctttgccttagatttttcccgggagaagaaactgctagaatgtttggattacctaaca
gctcccaaccctcccacaattagagaagagctctgcacggcttcctatgacaccatcact
gtccactggacttcggatgatgagttcagtgtggtctcctatgaactccagtacaccata
ttcactggacaagccaatgtcgttagtctttgtaactcggcagatagctggatgattgtg
cccaacatcaagcagaaccactatactgtgcatggcctacaaagtggcaccaagtatatc
ttcatggtcaaggccatcaaccaggcaggcagccgcagcagtgagcctgggaagctgaag
acaaacagtcagccatttaaactggatcccaaatctgctcatcgaaaactcaaggtgtcc
catgacaacctgactgttgaacgtgatgagtcatcatccaaaaagagtcacacacctgaa
cgcttcactagccaagggagctatggcgtggctggaaatgtgtttattgacagtggccgt
cattactgggaagtggtcataagcggaagcacatggtatgccattggccttgcgtacaaa
tcagctccaaaacatgaatggattgggaagaattctgcttcctgggccctttgccgctgc
aacaataactgggtggtgagacataacagcaaggaaatacccattgaaccagccccccac
ccccggcgtgtaggcatcctgctggactatgataatggctcaatcgctttttatgatgct
ttgaactccatccacctctataccttcgatgtggcgcttgcgcagcctgtgtgccccacc
tttactgtgtggaacaagtgtttgacgattataactggtcttcccatcccagaccatttg
gactgtacagaacagctaccttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (16)   
   RefSeq(nuc) (6)   
   GenBank (5)   
   EMBL (5)   
Protein domain (15)   
   Pfam (15)   
All databases (52)   

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