KEGG   Rattus norvegicus (rat): 54350
Entry
54350             CDS       T01003                                 
Symbol
Scfd1
Name
(RefSeq) sec1 family domain-containing protein 1
  KO
K19998  sec1 family domain-containing protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    54350 (Scfd1)
Membrane trafficking [BR:rno04131]
 SNARE
  SNARE associated proteins
   Syntaxin-binding proteins
    54350 (Scfd1)
 Endoplasmic reticulum (ER) - Golgi transport
  Others
   Others
    54350 (Scfd1)
SSDB
Motif
Pfam: Sec1 cwf21
Other DBs
NCBI-GeneID: 54350
NCBI-ProteinID: NP_062237
RGD: 619828
Ensembl: ENSRNOG00000031203
UniProt: Q62991 A6HBG9
Structure
Position
6:74531225..74609463
AA seq 637 aa
MVGSKMAASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKEL
RDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRS
KLEDIANAALAANAVTQVAKVFDQYLNFITLEEDMFVLCNQNKELVSYRAINRPDITDTE
METVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDP
LGTGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESTGVENSPT
GARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLE
GEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYE
EKIMSKTTLDKSLLDVISDPDAGTPEDKMRLFLIYYISAQQAPSEVDLEQYKKALTDAGC
NLSPLQYIKQWKAFAKMASTPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNL
PVTRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQ
NLVDYIKGKQGKHILYGCSEIFNATQFIKQLSQLGQK
NT seq 1914 nt   +upstreamnt  +downstreamnt
atggtgggaagcaagatggcggccagcattcgggaaaggcaaacagtggctctgaagcgg
atgttgaatttcaatgtgcctcatgttaaaaacagtcctggagaacccgtatggaaggta
ctcatctatgacagatttggccaagatatcatctctcctctgctgtctgtgaaggagctg
agagacatgggcatcaccctgcatctccttttgcactcagaccgagatccaattcgagat
gttcctgcggtgtactttgtgatgccaaccgaagaaaatattgacagactgtgccaggat
cttcgaaatcagctctatgaatcctattatttaaattttatttctgcgatttcaagaagt
aaactggaagacattgcaaatgcagcattggccgctaatgcagtcacacaggttgccaag
gtttttgaccagtatctcaattttattactttggaagaggacatgtttgtattatgtaat
caaaataaggaacttgtttcatatcgggccattaataggccagatatcacagacacagag
atggagactgttatggacactattgttgacagcctcttctgcttttttgttacattaggt
gctgttcccatcatccgatgctcaagaggaacggcagcagaaatggtggcagtgaaacta
gataaaaaactgcgggagaatctaagagatgcaagaaacagcctttttactggtgatcca
cttgggactggccagttcagcttccaaaggcccttattagtccttgtggacagaaacatt
gacttggcaacgcctctgcaccatacgtggacataccaagcgctggtacacgatgtcctg
gatttccacttaaacagagtaaatttggaagaatctacaggagtggaaaattctccaact
ggtgctagaccaaagaggaaaaacaagaagtcttacgatttaactccagttgataaattt
tggcagaaacataaaggaagtccattcccagaagtcgcagaatcagtccaacaagaacta
gaatcttacagagcacaagaagatgaggtcaaacgactgaagagcattatgggcctagaa
ggagaggacgaaggagccatcagcatgctttctgataacactgctaagctcacatcagct
gtcagttctttgccagaactccttgaaaaaaaaagacttatcgatctccatacaaatgtc
gccactgctgttttagaacacataaaggcaagaaaactggatgtatattttgaatatgaa
gaaaaaataatgagcaagactactctggataagtcccttctcgacgtcatatctgaccct
gacgcagggactccggaagacaaaatgaggctgtttcttatctactacataagcgctcag
caggcaccatctgaggttgatttggagcagtataaaaaggctttaacagatgcaggatgc
aaccttagccctttacagtatatcaaacagtggaaggcttttgccaagatggcctcaact
cctgccagctacggaaacactaccactaaaccaatgggtctcttgtcccgagtcatgaat
acaggatcccagtttgtgatggaaggcgtcaagaacctggtattgaagcagcagaatcta
cctgttactcggattttagacaatctcatggagatgaagtcaaaccccgagactgatgat
tacagatattttgatcccaaaatgctgcggagcaatgacagctcagttcctaggaacaaa
agtccattccaagaggccattgtctttgtggtaggaggaggcaactatattgagtatcag
aatcttgttgactacataaagggaaagcaaggcaagcatattttgtatggctgcagtgag
atttttaatgctacacagttcataaaacagctgtcacagcttggacaaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
3D Structure (1)   
   PDB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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