KEGG   Rattus norvegicus (rat): 59087
Entry
59087             CDS       T01003                                 
Symbol
Nxf1
Name
(RefSeq) nuclear RNA export factor 1
  KO
K14284  nuclear RNA export factor
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03008  Ribosome biogenesis in eukaryotes
rno03013  Nucleocytoplasmic transport
rno03015  mRNA surveillance pathway
rno05014  Amyotrophic lateral sclerosis
rno05164  Influenza A
rno05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    59087 (Nxf1)
   03015 mRNA surveillance pathway
    59087 (Nxf1)
   03008 Ribosome biogenesis in eukaryotes
    59087 (Nxf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    59087 (Nxf1)
   05168 Herpes simplex virus 1 infection
    59087 (Nxf1)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    59087 (Nxf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    59087 (Nxf1)
   03009 Ribosome biogenesis [BR:rno03009]
    59087 (Nxf1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     59087 (Nxf1)
   mRNA cycle factors
    Stress granule specific factors
     59087 (Nxf1)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    59087 (Nxf1)
SSDB
Motif
Pfam: Tap-RNA_bind TAP_C NTF2 LRR_8 LRR_4 LRR_9
Other DBs
NCBI-GeneID: 59087
NCBI-ProteinID: NP_067590
RGD: 62014
Ensembl: ENSRNOG00000019069
UniProt: O88984
Position
1:215084563..215097756
AA seq 618 aa
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCGEGNRRSGRGGSGIRSSRFEEDDGDVAM
NDPQDGPRVRYNPYTSRPNRRRDTWHDRDRIHVTVRRDRAPQERGGAGTSQDGTTKNWFK
ITIPYGKKYDKMWLLSMIQSKCSVPFNPIEFHYENTRAQFFVEDATTASALKAVNYKIQD
RENRRISIIINSSAPPYIVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ
NIDVVLNRRGCMAAALRIIEENIPELLSLNLSNNRLYKLDDMSSIVQKAPNLKILNLSGN
ELKSEWELDKIKGLKLEELWLDRNPMCDTFLDQSTYISTIRERFPKLLRLDGHELPPPIA
FDVEAPTMLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSTP
SNPQNPVRHNLAKYFNDSRNVKKIKDTTTRFRLLKHTRLNVVAFLNELPKTHHDVNSFVV
DISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASP
EEIQRAFAMPAPTPSSSPVPTLSQEQQDMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ
AFTHLKAKGEIPEVAFMK
NT seq 1857 nt   +upstreamnt  +downstreamnt
atggcggacgaagggaagtcatacaacgaacatgatgaccgtgttagtttcccacaaaga
agaaagaaaggtcgggggcctttccgatggaagtgtggtgaggggaatcgtaggtctgga
agaggtggttctggtatacggtcttcccggtttgaggaagatgatggagatgtggcaatg
aatgatccccaggatggcccccgagtgagatacaacccctataccagccgacctaaccgt
cggagagatacttggcatgatcgagatcggattcatgttactgtacggagagacagagct
cctcaagaaagaggaggtgctggcaccagtcaagatgggaccaccaagaactggttcaag
attacaattccttatggcaaaaagtatgataaaatgtggcttctgagcatgattcagagc
aagtgcagtgtccccttcaaccccattgagtttcactatgaaaatacacgggcccagttt
tttgtggaagatgccactaccgcttctgcattaaaggctgtcaactataagattcaggat
cgagaaaacagaaggatatctatcatcatcaactcttctgctccaccctatattgtacag
aatgaactgaagcctgaacaagtagagcagctcaagctgatcatgagcaaacgatatgat
ggctcccagcaagcacttgacctcaagggcctccgctcagacccagatttggtggcccag
aacatcgatgttgttctaaaccgtagaggctgtatggcagccgccctgaggatcattgaa
gagaacattcctgagctattgtctttgaacttgagtaacaacaggctgtacaagcttgat
gacatgtccagcattgtacagaaggcaccaaacttaaagatcctgaatctctctggaaac
gaattgaagtccgagtgggaattagacaagataaaagggctgaagctggaagagctgtgg
cttgacagaaaccccatgtgtgacaccttcctagaccagtccacctatatcagcaccatt
cgcgaacgatttcccaagttattacgcctggatggccatgagctaccccctccaattgcc
tttgatgtcgaagcccctactatgttaccaccctgcaagggaagctattttggaacagag
aacctaaagagtctggtcctgcacttcttgcagcagtactatgcaatttatgactcagga
gaccgccagggtcttctggatgcctaccatgatggcgcctgttgctcgctaagcactcct
tccaaccctcagaaccctgtccgacacaacttagccaaatacttcaatgacagcagaaat
gtgaagaagattaaagataccaccacgcggttccggctattaaagcatacacgtcttaat
gtcgttgccttcctcaatgagttacctaaaactcaccatgacgttaactcctttgtggta
gatataagtgcccaaacaagcacattgttgtgtttttctgtcaatggagtcttcaaggaa
gtggacgggaagtctcgagattctttacgtgctttcacgagaacgttcattgctgttcct
gccagcaattcagggctatgtattgtaaatgacgaattatttgtgcggaacgccagccct
gaagaaatccaaagagccttcgccatgcctgcacccacaccttcttccagcccagtaccc
acactctcccaagaacagcaggatatgttacaagcattttctacccagtctggcatgaac
ctcgagtggtctcagaagtgccttcaagacaataactgggactacaccagatctgcccag
gccttcactcatctcaaggccaagggagagattccagaagtagcgtttatgaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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