KEGG   Rattus norvegicus (rat): 60379
Entry
60379             CDS       T01003                                 
Symbol
Col5a3
Name
(RefSeq) collagen alpha-3(V) chain precursor
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    60379 (Col5a3)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    60379 (Col5a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    60379 (Col5a3)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   60379 (Col5a3)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 60379
NCBI-ProteinID: NP_068528
RGD: 70922
Ensembl: ENSRNOG00000020525
UniProt: Q9JI04
Position
8:complement(27580768..27626002)
AA seq 1737 aa
MRSCRRLDQLQAGLCLLLASLQLVSWTLAAEPVDVLETLGVHRDKAGVTKGPGFCPQRIP
QGDRAFRVGKSSLLSVPTWQLFPDGHFPENFSVLLTLRAQPANQSVLLSIYDENGVRQMG
LALGPALGLLGDSFRSLPKQINLMDGRWHRVAVSISGDKVTLVVDCEPQPPMFGQGPRVI
STAGLTVMGTQELGEESFEGDIQELLLIPDPQAALQACELYLPDCETPDSTTTGVTKEEP
ETPAPRRRKGKGKKKDRGRKGKGRKKNKTSRLSPTPGAPENQTSLHTPETEKPSPHLPPT
PTPLAITTTVTMGGNATVLQGLDSSTETEQMTPEMDATEESEGGGPTMGPEFRAAEQSLQ
TEFQIFPGAGEKGAKGEPATIEQGQQFEGPAGAPGPRGISGPSGPPGPPGFPGDRGLPGP
AGLPGIPGIDGVRGLPGTVIMMPFHFASGSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGP
VGLTGRPGPVGLPGYPGLKGELGEAGPQGPRGLQGPPGPPGREGKTGRAGADGARGLPGD
TGPKGDRGFDGLPGLPGEKGQRGDFGPVGQPGPPGEDGIKGLQGPPGPTGQAGEPGPRGL
IGPRGPPGPLGRPGVTGSDGAPGAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGE
KGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPQGYPGPRGVKGTSGNRGL
QGEKGERGEDGFPGFKGDEGPKGDRGNPGLPGPRGEDGPEGQKGPEGLPGDEGPPGAAGE
KGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTPGTRGDRGQ
PGATGQPGPKGDVGQNGSPGAPGEKGLPGLQGPPGFPGPKGPPGPQGKDGIPGHPGQRGE
LGFQGQTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGEPGLPGIEGREGAKGELGP
LGSLGKEGPPGPMGFPGPQGAPGDPGPIGLKGDKGPPGPLGANGSPGERGPVGPSGGIGL
PGQSGGQGPIGPAGEKGSPGERGVPGPTGKDGIPGPPGLQGPPGAAGPSGEEGDKGEVGM
PGHKGSKGDKGDAGPPGPTGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGV
IGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSAGSPGLPGGVGQPGAVGE
KGEPGNAGDAGPPGVPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGAKGNMGPTGL
PGDLGPPGDPGVPGTDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEGK
EGEKGAKGDAGPDGPPGRTGPIGARGPPGRVGPDGLPGIPGPVGEPGLLGPPGLIGPPGP
LGPPGLPGLKGDAGLKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGLQGDPGLPGP
VGSLGHPGPPGVVGPLGQKGSKGSPGSLGPRGDPGPAGPPGPPGSPAEVHGLRRRRSVLD
TPEGGLEEVMASLNSLSLELEQLQRPPGTAESPGLICHELHRNHPHLPDGEYWIDPNQGC
ARDAFKVFCNFTAGGETCLYPDKKFETVKLASWSREKPGGWYSTFRRGKKFSYVDADGSP
VNVVQLTFLKLLSAAAHQRFTYTCQNSAAWLDEASGDHRHSIRFQGTNWEELSFNQTTAA
TIKVPHDGCRVRKGQAKTLFEFSSSVGFLPLWDVAAVDFGQTNQKFGFELGSVCFSS
NT seq 5214 nt   +upstreamnt  +downstreamnt
atgagaagctgccggagactggaccagcttcaggccggcctctgcctgctcctggcctcc
ctacaactcgtgtcctggacgctggctgcagaacctgtggatgtattggaaaccttgggt
gtgcatagggacaaggctggggtgaccaaagggcctggcttctgcccccagaggattcca
cagggtgaccgagcattcagggtgggcaagtccagccttctcagcgtccccacatggcag
ctctttccagatggacattttcctgagaacttttctgtgctgctcactctgcgggcccag
ccagccaatcaatctgtccttctgtctatatatgacgagaatggtgtccggcagatgggg
ctggcactggggccagctctgggtctccttggtgactctttcaggtctcttcccaagcag
atcaaccttatggatggcaggtggcaccgggtggcggtcagcatcagcggtgacaaggtg
accctggtggttgactgtgaacctcagccccccatgtttggtcaggggcctcgggttata
agtacagctggactcacggtgatgggaacccaggagctcggggaggagtcttttgaggga
gacatccaggagctgctgttaattccagaccctcaggctgctctccaggcctgtgagctc
tacctgcctgactgtgagacccccgattccacaaccacaggggtcactaaagaagaacca
gaaacacctgcccctcgtcgacgaaagggcaaaggaaagaaaaaagatcggggtcgcaag
ggcaagggaagaaagaaaaacaagacctcaagactgagtccaaccccaggtgcccctgag
aaccagacctccctccacacccctgagacagagaagccatcgccccatctgcctccaact
cccacacctttggccatcaccaccactgtcacgatgggaggaaatgccacagttttgcag
gggttggactccagtactgaaactgagcagatgactccagagatggacgctactgaagag
agtgaaggaggtggcccgaccatgggccccgagttccgggcagcagaacagtctttacag
actgagttccagatctttcctggtgctggagaaaagggagcgaaaggagaacctgcgact
atagagcagggacagcagtttgagggacctgcaggagctccaggaccccggggaatatct
ggtccttcaggccctcctgggcctccgggcttccctggggaccgtggcctaccgggccct
gctggcctcccaggaatcccaggcattgatggcgtccggggcctgccaggcacagtgatc
atgatgccgttccattttgcaagcggctcgatgaaaggacccccagtctcctttcaacag
gcacaggcccaggcagtactgcaacaggctcagctgtccatgaaagggccccctggtcca
gtagggctcactgggcgcccaggccctgtgggcctccctggatatccaggtctgaaaggt
gaattgggagaagcagggcctcagggcccccgaggattgcagggccctcctgggcctcct
ggacgggaaggcaagacaggccgagctggagcagatggggctcggggtcttccgggagac
acaggacctaagggtgaccggggctttgatggcctgcctggactgcctggtgagaagggc
cagaggggtgactttggacctgtaggacaacctggtcccccaggagaagatggtataaag
ggcctgcagggacctccaggccccactggccaggctggagagccgggtccccgaggtctg
attggccccagaggcccccctggtcctttaggacgcccgggtgtgacagggagtgatggc
gcaccgggtgccaaaggcaacgtgggtcctcccggagaaccaggccccccaggacagcaa
ggaaaccacggctcccagggaatcccaggcccccaggggcccattggcacacccggggag
aagggtcctcctggaaaccccggaattccaggtgtcccaggatctgagggccccccgggc
cacccaggccatgagggtcccaccggagaaaagggggctcagggcccaccagggtcagca
ggccctcagggctatcctggacctcgtggtgtgaagggtacctctggtaaccggggcctc
caaggagagaaaggagaaaggggagaggatggttttccaggcttcaagggtgatgaggga
ccaaaaggcgaccggggaaacccgggactcccaggtcccagaggagaggatggcccagaa
ggacaaaaggggcctgagggactgcctggtgatgagggccccccaggagcagcaggggag
aagggcaagcttggggtgccaggtctcccaggttatccaggacgcccaggacctaaggga
tctattggatttcctgggccccttggaccactgggggagaaaggcaagcggggcaaagca
gggcagccaggggaggaaggagaacgtggcacaccgggcaccagaggagacagaggacag
ccaggggccacaggccagcctggccctaagggagatgtgggccagaacgggtctcctggg
gcccccggagaaaagggtctacccggtctgcaaggtcccccaggattccctgggccaaaa
ggccccccaggtcctcaggggaaagatgggatacccggacaccctggacaaagaggagaa
ttgggcttccaaggtcagacaggcccccctggaccagctggtgtccttggtcctcaggga
aaggtaggggatgtgggtcctctaggcgagagaggccccccagggcctcctggaccgcct
ggtgaaccaggtctgccaggcatagaaggcagagaaggggccaagggtgagctaggaccc
ctggggtccctcggaaaggaggggccacctgggcccatgggcttccctggcccacaagga
gcccccggagacccaggacccattggtttgaagggtgacaagggtcccccgggccctctt
ggggcaaatggctccccaggtgagcgtggtcctgtgggcccctctggaggcattgggctt
cctggccagagtggtgggcaaggccctattggtcctgctggtgagaaggggtccccggga
gaacggggtgtgcctggtcctactggcaaagatggtattccagggcccccgggacttcag
gggccccctggagctgcagggccttctggtgaggaaggagacaagggggaagtagggatg
cctggacacaagggaagcaaaggggataaaggagatgcgggcccacctggaccaacagga
ataaggggtccagcgggccatccaggccccccgggtgctgatggtgctcagggtcgccgg
ggaccccctggcctctttgggcagaaaggtgatgatggagtccgaggctttgtaggtgta
attggtcctccaggcctgcaggggctgccgggccctcctggggagaaaggcgaggttgga
gacgtgggatccatgggtccccacggagctccaggccctcggggtccccctgggcccagt
ggatcagcgggttccccagggctgcctggaggagtagggcagcctggcgctgtgggcgag
aagggtgagccagggaatgctggagacgctggacccccaggagttccaggcatccctggg
cccaaaggtgaaattggtgaaaagggggattcgggtccatcaggggctgctggtcctcca
ggcaaaaagggacctcctggagaggacggagctaaggggaacatgggtcccacaggactc
cctggagatctaggacccccaggagaccctggagttccgggtacggatggcatcccaggg
gagaaggggaatgctggtgatattgggggaccggggccacctggagcttcaggggaacct
ggtgcccgtgggctccctggcaagaggggttcccctggccgcatgggtccagaaggaaaa
gagggagagaaaggcgccaagggagatgctggtcccgatggccccccaggcagaacaggc
cccattggggctcgggggccccctggacgggttgggcctgatggtcttccagggatccct
ggtcctgtgggtgaaccaggtctcctgggacctcctgggctaatcggccctccagggccc
ctgggcccacctggcctccctggcctgaagggagacgctggcctcaagggggaaaagggc
cacattgggctaatcggcctcattggtcccccaggggaggctggggaaaaaggcgatcag
gggttgccaggtgtgcagggccctccaggccttcagggagaccctggtcttcctggtcct
gttggctccttaggtcaccctgggcccccaggtgtggtgggccctctgggacagaagggt
tccaaggggtccccgggatctcttggacctcgtggagaccctggaccagcaggtcctcct
ggtcccccgggttcccctgctgaggtgcacggcctgcgtaggcgccgctctgtgttggac
accccagaaggtggcctggaggaagtgatggcctcactcaattcactgagcttggagctg
gagcagttgcagcgacccccaggcacagccgagagcccaggcctcatatgccacgagctt
catcgaaaccacccacacctgccggacggagagtactggattgaccccaatcagggctgt
gcacgggacgccttcaaggtcttctgcaacttcactgccggaggtgagacctgtctctac
ccagacaagaagtttgagacggtgaaactggcctcctggtcccgagaaaagcctggaggt
tggtacagcaccttccgccgagggaagaagttctcctatgtggatgctgacggctccccg
gtgaatgtggtccagttgaccttcctgaagttgttgagcgctgcagcccatcagaggttc
acttacacctgccagaactccgcagcatggctggacgaagcttcaggtgaccacaggcac
tctatccgcttccaagggaccaactgggaagagttgtccttcaaccagacaacagcagcc
accatcaaggtcccccatgatggctgccgggtccggaagggacaggcgaagaccctcttt
gaattcagctcttctgtgggctttctgcctctgtgggatgtggccgccgttgactttggc
cagacgaaccagaagtttgggtttgaacttggctccgtctgctttagcagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system