KEGG   Rattus norvegicus (rat): 60395
Entry
60395             CDS       T01003                                 
Symbol
Trpc3
Name
(RefSeq) short transient receptor potential channel 3
  KO
K04966  transient receptor potential cation channel subfamily C member 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
rno05017  Spinocerebellar ataxia
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    60395 (Trpc3)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    60395 (Trpc3)
   05022 Pathways of neurodegeneration - multiple diseases
    60395 (Trpc3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    60395 (Trpc3)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   60395 (Trpc3)
SSDB
Motif
Pfam: TRP_2 Ion_trans PKD_channel Ank_2 Ank Ank_4 Ank_5 PBC
Other DBs
NCBI-GeneID: 60395
NCBI-ProteinID: NP_001401934
RGD: 61973
Ensembl: ENSRNOG00000016070
Position
2:complement(121409436..121487095)
AA seq 909 aa
MSTKVKKCREPARVTLPAPEEEDGEAEGAEPQRRRRGWRGVNGGLEPPCPRAPPSPGPDA
SSEGSPSRWRTAGMRDKGRRQAVRGPAFMFGARGPSLTAEEERFLDAAEYGNIPVVRKML
EESRTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYVRIVE
AILGHPGFAASRRLTLSPCEQELRDDDFYAYDEDGTRFSPDITPIILAAHCHKYEVVHLL
LLKGARIERPHDYFCRCADCAEKQRLDAFSHSRSRINAYKGLASPAYLSLSSEDPVLTAL
ELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLESVEPLER
HGHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCLVVLVVALG
LPFLAIGYWIAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRFEGITTLPNITV
IDYPKQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYIVQLWNVLDFGMLSI
FIAAFTARFLAFLQATKAQQYVDSHVQESDLSEVTLPPEVQYFTYARDKWLPSDPQIISE
GLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILY
SYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMV
VVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSLVPSPKSFVYF
IMRITNFSKCRRRRLQKDLELGMGNSKSRLNLFTQSNSRVFESHSFNSILNQPTRYQQIM
KRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATEELAILIHKLSEK
LNPSALRCE
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgtccaccaaggtcaagaagtgccgggagcccgcgagggtgaccttgcccgcgccggag
gaggaggatggcgaggccgagggagccgagccgcagcgccgccgccggggctggaggggc
gtcaacggcgggctggagccgccctgcccgcgcgcgccgccgtccccggggcccgacgcg
tcgtcggagggcagtccatccaggtggcgcacagcagggatgcgtgacaagggcaggcgc
caggcagtacgtggcccggccttcatgttcggtgctcgtgggcccagcctcacagctgag
gaggagcgcttcctggacgctgcagagtacggcaacatccctgtggtgcgcaagatgctg
gaggagtctcgcacgctcaatgtcaactgcgtggactacatgggccagaatgcgctgcag
ctggccgtgggcaatgagcatctggaggtgaccgagctgctgctgaagaaggagaacctg
gcgcgtatcggtgatgcgctgctgctcgccatcagcaaaggctatgtgcgcatcgtggag
gccatcctaggccacccaggctttgcggccagccggcgcctgaccctcagcccttgcgag
caagaactgcgcgatgacgacttctatgcttacgacgaggatggcacacgcttctcacct
gacatcacgcccatcatcctggctgcgcattgccataaatacgaggtggtgcacctgctg
ctactcaagggtgcacgcatcgagcggccacacgactacttctgtcgctgcgccgactgt
gctgagaagcaaaggcttgatgccttcagccactcaaggtctaggatcaatgcctacaag
ggactggccagcccagcatacttgtcgctgtccagcgaggaccctgtgctcacagcgctg
gaactcagcaatgagctggccaagctggccaacatagagaaggagttcaagaatgactac
aggaagctctccatgcagtgcaaagacttcgtagtaggtgtgctggacctgtgccgggac
tcagaggaggtggaagccattctgaatggagatctggaatcggtggaacccctggagaga
cacgggcacaaggcgtcgctgagtcgggtcaaacttgccattaaatatgaagtcaaaaag
tttgtggctcaccccaactgccaacagcagcttttgaccatctggtacgagaacctctcg
ggccttcgggagcagaccatcgctatcaagtgtctggtcgtgttggtcgtggccttgggc
cttccattcctcgccatcggctactggattgcaccttgtagcaggctggggaaaattctt
cgaagccccttcatgaagttcgtggctcacgctgcctccttcatcatcttcctgggtctg
cttgtgttcaacgcctcagaccggtttgaaggcatcaccacgctgcccaacatcaccgtt
attgactaccccaagcaaatcttcagggtgaagaccacccagttcacatggacagaaatg
ctaattatggtctgggttctcgggatgatgtggtctgagtgcaaggagctgtggctggag
gggccccgggagtacatcgtgcagctgtggaacgtgcttgacttcgggatgctctccatc
ttcattgctgccttcaccgccaggttcctagcgtttctgcaagccaccaaagcgcagcag
tatgtggacagccacgtgcaggagagcgacctgagcgaagtcacactcccaccagaggtt
cagtatttcacctatgctagagataaatggcttccttctgaccctcagatcatatcggaa
ggcctctatgccatagctgtggtgctcagcttctcccggatcgcgtacattctccctgca
aacgagagctttgggcccttgcagatctctctggggaggactgtgaaggacatattcaag
ttcatggttctcttcatcatggtgttcctggctttcatgattggcatgttcatactttac
tcctactaccttggggccaaagtaaaccctgcttttaccacggttgaagaaagtttcaag
actttgttttggtccatatttggactctctgaagtgacttctgttgtcctcaaatatgac
cacaaattcatagagaacattggctatgtcctttatggaatatacaatgtaactatggtg
gtcgttctgctcaacatgctgattgctatgattaacagctcataccaagaaatcgaggat
gacagtgatgtagagtggaagtttgctcgttccaaactctggctatcctacttcgatgat
ggaaaaacattacctccacccttcagtctggtccctagtccaaaatcgtttgtttatttc
atcatgaggatcactaacttttccaaatgcaggaggagaagacttcagaaggatctggaa
ctgggcatgggtaactcaaagtccaggttaaacctcttcactcagtctaactcgagagtt
tttgaatcacacagttttaacagcattctcaatcagccaacacgatatcagcagataatg
aaaagactcataaaacggtatgttttgaaagcacaagtagacaaagaaaatgatgaggtg
aacgaaggtgaactgaaagaaatcaagcaggatatctccagccttcgttacgaacttttg
gaagataagagccaagcgacggaggaactggccatcttgattcataaactcagtgagaaa
ctgaaccccagtgcgctgaggtgtgaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (14)   
   RefSeq(nuc) (6)   
   GenBank (4)   
   EMBL (4)   
Protein domain (9)   
   Pfam (9)   
All databases (41)   

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