KEGG   Rattus norvegicus (rat): 64345
Entry
64345             CDS       T01003                                 
Symbol
Hif3a
Name
(RefSeq) hypoxia-inducible factor 3-alpha isoform 1
  KO
K09096  hypoxia-inducible factor 3 alpha
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    64345 (Hif3a)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    64345 (Hif3a)
SSDB
Motif
Pfam: PAS_3 PAS_11 PAS HIF-1 PAS_4 PAS_9 HLH PAS_2 ATPase
Other DBs
NCBI-GeneID: 64345
NCBI-ProteinID: NP_071973
RGD: 70332
Ensembl: ENSRNOG00000017198
UniProt: Q9JHS2
Position
1:complement(86846196..86878527)
AA seq 662 aa
MDWDQDRSSTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTIS
YLRMHRLCAAGEWNQVGKEGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQL
ELIGHSIFDFIHPCDQEELQDALTPRPSLSKKKSEAATGRHFSLRMKSTLTSRGRTLNLK
AATWKVLHCSGHMRAYKPPAQTSPAGSPRSEPPLQCLVLICEAIPHPASLEPPLGRGAFL
SRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTG
QYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLSLEQTEQHTRR
PPQLGTSSKKGIPGNSLDPPAPRILAFLHPPALSEASLAADPRRFCSPDLRRLMAPILDG
PPTAATPSTPQAARRPQSPLPADLPDQLAVGLENAHRLSTARKNKTMETDLDIAQDPDTL
DLEMLAPYISMDDDFQLNSSEQLPKVHRRPPRTARRPRARSFHGLSPPIPEATLLPRWGS
DPRLNCSSSSKGDPPTAPLTPRTRKRALAQSSEDKGLELLETKPPKRSPRLEPGSVLLPP
LSLSFLLQGRQLPGNQPDPRAPLVDSHEPLGLAPSLLSLYQHEETIQPRNHFLPAAGLAQ
TH
NT seq 1989 nt   +upstreamnt  +downstreamnt
atggactgggaccaagacaggtcgagcaccgagctgcggaaggagaagtcgcgggatgcg
gcccgcagcaggcgcagccaggagacggaggtgctgtaccaactggcgcacaccctgccc
tttgcgcgcggcgtcagcgcgcacctggacaaggcctccatcatgcgcctcacaatcagc
tacttgcgcatgcaccgcctctgcgctgcaggggagtggaaccaggtgggaaaagaggga
gaaccactggacgcctgctacctgaaggccctggagggtttcgtcatggtgctcaccgct
gagggagacatggcttacctgtcggaaaatgtcagcaagcacctgggcctcagtcagctg
gagctcattggacacagtatctttgattttatccatccctgtgaccaagaggaactccag
gatgccctgaccccgagaccaagcctgtcaaagaagaagtcagaagcagcaacaggacgc
cacttttccctgcgaatgaagagcacactcaccagcagggggcgcacgctgaacctcaaa
gcggccacctggaaggtgctgcactgctcaggacatatgagggcctacaagccccctgca
cagacttcccccgccgggagccctcgctccgagcctcccctgcaatgcctggtgcttatc
tgtgaagccatcccccacccagccagtctggagcccccactgggccgaggggcctttctc
agtcgccacagcctggacatgaagttcacatactgcgacgagaggattgcagaagttgct
ggctacagccccgatgacctgattggctgttctgcctatgaatacatccacgctttggac
tctgatgcagtcagcaggagcatccacactttgctgagcaagggccaggcagtaacaggg
cagtatcgcttcctggcccggactggaggctatctgtggactcagactcaggctacagtg
gtgtcaggggggcggggcccccagtcggaaagtatcatctgcgtccacttcctgatcagc
cgtgtagaagagaacggagtggtgctgtccctggaacaaacggagcaacatactcgcaga
ccccctcagctgggtacctcctcgaagaagggtatcccaggcaacagtctagaccctccc
gctccacggatcctggccttcctgcaccctccagccctgagtgaggcctccctggctgct
gaccctcgccgtttttgtagcccagacctgcgccgcctcatggcacccatcctggatgga
cctcccacagccgctacccccagcaccccgcaagctgcacggagaccccaaagtcctctt
ccggctgatctcccagatcagttggctgtgggcttggagaatgcacacagactctccact
gcccggaaaaacaagaccatggagacagatctagatatagctcaggaccctgacactctg
gacttggagatgttggctccgtacatctccatggatgatgacttccagctcaactccagc
gagcaattgcccaaagtccaccgcagacctcccaggacggcccgcaggcctcgtgctcgg
agcttccatggcctgtcgcctcccatccctgaggccaccctgctgccccgctgggggagt
gatccacgactgaactgttccagctcctccaagggggatccccccacagcccccctgacg
cctagaactcggaagagggccttggcccagagctcagaggacaaagggttggagctgctg
gaaacgaagccccccaagcggtccccaagactagaacctggaagtgtcctgctgcctccg
ctcagcctgagtttccttctgcaaggtcgacaacttccagggaaccagccggatcccaga
gccccactcgtggattcgcatgagcccttgggcctagctccctcgctgctctctctctac
cagcatgaggaaactatccagcccaggaaccacttcctcccagcagcaggcttggcccag
acacactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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