KEGG   Rattus norvegicus (rat): 64353
Entry
64353             CDS       T01003                                 
Symbol
Pdlim5
Name
(RefSeq) PDZ and LIM domain protein 5
  KO
K19867  PDZ and LIM domain protein 5/6/7
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    64353 (Pdlim5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:rno04990]
    64353 (Pdlim5)
Domain-containing proteins not elsewhere classified [BR:rno04990]
 LIM domain-containing proteins
  PDZ-LIM family proteins
   64353 (Pdlim5)
SSDB
Motif
Pfam: LIM PDZ PDZ_6 DUF4749 PDZ_2
Other DBs
NCBI-GeneID: 64353
NCBI-ProteinID: NP_445778
RGD: 621076
Ensembl: ENSRNOG00000016419
UniProt: Q62920 A6HW58
Position
2:complement(233625478..233793582)
AA seq 591 aa
MSNYNVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQG
MTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVAVQKGEPKEVVKPVPITSPAVSKVTST
TNMAYNKVPRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPPPVAAVTPPPLSASGLH
ASANPSAAQCSSPPNTGKPAVHVPRQPTVTSVCSESAQELAEGQRRGSQGDIKQQNGPPR
KHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESEN
DNAKKANSTPEPSQQSASPLSAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSPSWQR
PNQAAPSTGRISNSASSSGTGAPMKPAVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQ
AIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRK
ILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPI
EAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgagcaactacaatgtgtcattggttggcccagctccttggggtttccggctccaaggt
ggcaaggatttcaacatgcctctgacaatctctagtctgaaagatggtggcaaggcatca
caggcacacgtcagaataggcgatgtggttctcagcattgatggaatcagtgcccaggga
atgactcatctcgaagcgcagaacaagattaaggcttgtacaggctccttgaatatgact
ctgcaaagagcttctgctgctgccaagtctgagccagttgctgtccagaagggggaacct
aaggaagtagttaagcctgtgcccattacatctcctgctgtatccaaagtcacttccaca
accaacatggcttacaataaagtgccacggccctttggctctgtgtcttcaccaaaagtc
acatccatcccatcgccatcgtccgccttcaccccagcccatgccgccacgtcatcacac
gcttcccctccacctgtggctgctgtcactccccctccactctctgcatccggactgcat
gctagtgccaatcctagtgctgcccagtgttcgtctccaccaaacactggtaaacctgca
gttcatgtcccacggcagcccacagtcaccagcgtgtgttccgagtctgctcaggagcta
gcagagggacagagaagaggatcccagggtgacattaaacagcaaaatggcccaccaaga
aaacacatcgtggagcgcaacacggagttttatcacatacccactcacagtgatgccagc
aagaaaaggctgattgaggacactgaggactggcgcccacggactggaacgacacagtct
cgttccttccgaatcctcgcccagatcactgggactgagcatttgaaagaatctgagaat
gacaatgcgaagaaggcaaatagcactccggagccttctcagcagtcagcttcacctctg
agcgcggcggagagcctggagagcccaggttcaaacaggccagtggtggctggcctcagg
tccgctgctgctttcaagcctgtaggatccaccagtgtcaagtcaccaagctggcagcgt
ccaaaccaagcagcaccttctactgggagaatttcaaacagtgcaagctcttcaggtaca
ggggcacccatgaagccagctgtggggccaccccagccaagtgaccaagacactcttgtg
cagagagctgagcacattccggcgggcaagcggactcccatgtgtgcccactgcaaccag
gccatcaggggaccttttctcgtggctctggggaagtcctggcatccagaagaattcaac
tgtgctcactgcaaaaacacgatggcctatataggctttgtggaggagaagggagcactg
tattgtgagctatgttatgagaagttctttgctcctgaatgtggccggtgccagaggaag
atccttggggaagtcatcaatgctttgaagcagacctggcacgtgtcctgttttgtgtgt
gtggcctgtggaaaacccatccgtaataatgttttccacttggaagatggcgagccctac
tgtgagacagactattatgcactttttggaacaatatgtcgcgggtgtgaattccccata
gaggctggtgacatgttcctggaagctctgggctccacctggcatgacacttgctttgtg
tgctccgtgtgttgtgaaagtttggaagggcagacatttttctccaagaaggacaagcca
ctttgcaaaaaacatgctcattctgtgaatttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (27)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (24)   
DNA sequence (28)   
   RefSeq(nuc) (24)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (70)   

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