KEGG   Rattus norvegicus (rat): 64470
Entry
64470             CDS       T01003                                 
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
rno04120  Ubiquitin mediated proteolysis
rno05161  Hepatitis B
rno05170  Human immunodeficiency virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    64470 (Ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    64470 (Ddb1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    64470 (Ddb1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    64470 (Ddb1)
   05161 Hepatitis B
    64470 (Ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    64470 (Ddb1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    64470 (Ddb1)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     64470 (Ddb1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      64470 (Ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      64470 (Ddb1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 64470
NCBI-ProteinID: NP_741992
RGD: 621889
Ensembl: ENSRNOG00000020715
UniProt: G3V8T4 A6I047
Position
1:216677810..216703605
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGESNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtcgtaacggcgcagaagcctaccgcagtgaacggctgtgtgacc
ggacactttacttcagcggaagacttgaacctgttgattgctaaaaacacaagattagag
atctatgtggtcaccgcagaaggcctacggccagtcaaagaggtggggatgtatgggaag
atcgcagttatggagctcttcagacccaagggggagagtaaagacctgctgttcatcttg
actgctaagtacaatgcctgcatcctggagtataagcagagtggtgaaagcattgatatc
attacaagggcccatggcaatgtccaggaccgtattggtcgcccctcagagactggcatc
attggcatcattgaccctgagtgccgtatgattggcctccgactctacgatggccttttc
aaggtcattccactagaccgagacaataaagagctcaaggcctttaacatccgcctagaa
gaattgcatgtcatcgatgtcaagttcctgtatggttgtcaagcgcctaccatttgcttt
gtctaccaggatcctcaggggcggcacgtgaaaacctatgaggtgtctcttcgggagaag
gagttcaacaagggcccttggaagcaggagaatgtagaagccgaagcttcaatggtgatc
gcagtcccggagccttttggaggtgccatcatcattggacaggagtcaattacctatcac
aatggtgataaatacctggcaatcgctcctcctatcattaagcaaagcactattgtgtgc
cataaccgggtggatcctaatggctcacggtaccttctgggagatatggaaggacggctt
ttcatgctgctcttagagaaggaggagcagatggatggcaccgtcaccctcaaggacctt
cgagtggaactccttggagagacctccattgcagagtgcctaacatatcttgataacggt
gttgtgtttgtcgggtctcgcctgggtgattcccagctcgtaaagctcaatgtcgacagc
aatgaacaaggctcctatgtagtggctatggaaacctttaccaacttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggacagggtcagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaacggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccactgcggtctgacccaagtcgggag
actgatgacactttggtactctcttttgtgggccagacaagagttctcatgctaaatgga
gaggaagtggaagaaacagaattgatgggctttgtggacgatcagcagactttcttttgc
ggcaatgtggctcatcagcagcttatccagatcacctcagcgtctgtaaggttggtctct
caagagcccaaagctttggtcagcgagtggaaggagccccagggcaagaacatcagtgtg
gcctcctgtaacagcagccaggtggtagttgctgtgggaagggcactatactatcttcag
atccatcctcaggagctccggcaaatcagccacacagagatggaacatgaagtggcttgc
ttggatatcaccccactaggagagagcaatggcctgtccccactttgtgccattggtctc
tggacagatatttcagctcgtatcttgaagctcccatcctttgaactactgcacaaggag
atgctgggtggagagatcatccctcgatctatcctgatgaccacttttgagagcagccac
tacctcctttgtgccttgggagatggggctctcttctactttgggctcaacatagagaca
ggcttactgagtgaccgtaaaaaggtgactttgggtacccagcccacggtgttgaggaca
ttccgttctctttctaccaccaacgtctttgcttgctcagaccggcccactgtcatctat
agcagcaatcataagttggtcttctccaatgttaacctcaaggaggtgaactatatgtgt
cctctcaactcagatggctatcctgacagtctggcattggccaataacagcactctcacc
attggcaccatcgatgagatccagaaactccatattcgcacggttcctctctatgaatct
cccaggaagatctgttatcaggaagtgtctcagtgctttggggtcctttccagccgcatt
gaagttcaagataccagtggaggcactactgctttgaggcccagtgctagcacccaggcc
ctgtccagcagcgtcagctccagcaagctcttctctagtagtacggctcctcacgagacc
tcctttggagaagaggtggaagtgcacaacctcctcatcattgaccagcatacttttgaa
gtgcttcatgcccatcagtttctacaaaatgagtatgccctcagcctggtctcctgcaaa
ttgggtaaagaccccaacacatacttcattgtgggcacagccatggtatatcctgaagag
gcggagcccaaacagggtcgtattgtggtcttccagtattcggatggaaaactacagact
gtggccgaaaaggaagtaaagggggctgtgtactctatggtggagtttaatgggaagctg
cttgctagcatcaacagcacggtgcggctctatgaatggaccacagaaaaggaacttcgc
actgagtgcaatcactacaacaacatcatggccctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgatcagtgctactgcttgcctacaagcctatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggagatcttg
gatgatgacaattttctgggagctgagaatgcctttaacttgtttgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctacaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgagact
tctacccctacccagggctcggtgctctttggcacagtcaacggcatgatagggctggtg
acctcactgtcggagagctggtacaacctcctgttggacatgcagaaccgactcaataag
gtcatcaaaagtgtgggcaagattgagcactccttctggagatcctttcacactgagcga
aagacagaaccagccacaggcttcatcgatggtgacctgattgaaagtttcctagatatc
agccgccccaagatgcaggaggttgtggcaaacttgcagtatgatgatggcagtggtatg
aagcgggaggcaactgcagatgacctcatcaaagtcgtggaggagctaactcggatccat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (22)   
   RefSeq(nuc) (4)   
   GenBank (9)   
   EMBL (9)   
Protein domain (3)   
   Pfam (3)   
All databases (46)   

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