KEGG   Rattus norvegicus (rat): 64474
Entry
64474             CDS       T01003                                 
Symbol
Hdlbp
Name
(RefSeq) vigilin
Organism
rno  Rattus norvegicus (rat)
SSDB
Motif
Pfam: KH_1 KH_2 RNase_E_G_Thio
Other DBs
NCBI-GeneID: 64474
NCBI-ProteinID: NP_742036
RGD: 620962
Ensembl: ENSRNOG00000031479
UniProt: A6JR00 A6JR01
Position
9:complement(101395491..101465446)
AA seq 1268 aa
MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEP
AGAWSNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLA
KDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKT
ATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGP
YNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAV
EVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAK
ANSFTVSSVSAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVA
QEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNL
IRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEV
IINFPDPAQKSEIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKG
GANIKKIREESNTKIDLPAENSNSETIVITGKRANCEAARSRILSIQKDLANIAEVEVSI
PAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLA
EEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITIIGKE
DAVREAQKELEALIQNLDNVVEDYMLVDPRHHRHFVIRRGQVLREIAEEYGGVMVSFPRS
GTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRIQQIT
RDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIVISGRKEKC
EAAKEALEALVPVTIEVEVPFDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSHTIAI
TGLAANLDRAKAGLLDRVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRL
EHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILKIVGELEQMVSEDVPLDHRVHA
RIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLAD
VVDSEALQVYMKPPAHEESKAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPK
TLPWGPKR
NT seq 3807 nt   +upstreamnt  +downstreamnt
atgagctccgttgcagttttgacccaagagagttttgctgaacatcgaagtgggctggtt
ccacaacaaatcaaagttgccacattaaattcagaagaggaaagtgaccctccaacctac
aaggatgccttccctccactgcctgagaaagcagcttgcttggaaagtgcccaagaacct
gctggagcctggagtaacaagatccggcccatcaaggcctctgtcatcactcaggtgttt
catgtacccctggaggagagaaaatataaggacatgaaccagtttggagaaggtgaacaa
gcaaaaatctgccttgagatcatgcaaaggactggtgctcacctggagctctctctggct
aaagaccaaggtctctccatcatggtctcagggaagctggatgcagtcatgaaagcccgg
aaagacattgttgctagactacagacacaggcctcagccactgttcccattcctaaagag
caccaccgctttgttattggcaaaaacggagaaaaactacaagacttagaactgaaaact
gcaaccaaaatccagatcccacgcccagatgaccccagtaatcagatcaagatcactggc
accaaagaaggcatcgagaaagctcgccatgaggtccttctgatctctgctgagcaggac
aagcgtgccgtagagaggctagaagtggagaaggccttccaccccttcatcgctgggccg
tacaatagacttgtgggtgaaatcatgcaggagacagggacgcgaatcaacatccctcca
cccagtgttaaccgtacagaaatcgtcttcactggagagaaggaacagctggctcaggct
gtggctcgtattaagaagatttatgaggaaaagaagaagaagactacgaccattgcggta
gaggtgaagaaatctcagcacaagtatgtcatcgggccgaagggcaactcactgcaagag
atcctggaaagaactggagtctccgttgagatcccgccctcagacagcatctccgagact
gtgatacttagaggcgagcctgaaaagctgggacaggcattgactgaagtctatgccaag
gccaacagttttacagtctcctcagtctctgccccttcctggcttcaccgtttcatcatt
ggtaagaaagggcagaacctggccaaaatcactcagcaaatgccaaaggttcacattgag
ttcacagaaggtgaggacaagatcaccctggagggccccacagaagatgtgaatgtagcc
caggaacagattgaaggaatggtcaaagacctgattaatcggatggactatgtagagatc
aacattgaccataaattccacagacacctcattgggaagagtggagccaacatcaacaga
atcaaagaccagtacaaagtgtctgtgcgcatcccccctgacagcgagaagagtaacctg
atccgaattgagggagacccacaaggtgtgcaacaggccaagcgggagctgctggagctt
gcttctcgcatggaaaatgagcgcaccaaggatctaatcattgagcaaagatttcatcgc
acaatcattgggcagaaaggtgaacggattcgagaaattcgtgacaaattcccagaggtg
atcatcaactttccggatccagcacaaaagagtgagattgttcaactcagaggccccaag
aatgaggtggagaaatgtaccaagtacatgcagaaaatggttgcagacctggtggaaaat
agctattcaatttctgtaccgatcttcaaacagtttcacaagaatatcattgggaaagga
ggtgcaaacattaaaaagattcgtgaagagagcaacaccaagattgaccttcctgccgag
aacagcaactcggagaccattgtcatcactggcaagcgagccaactgtgaagccgcccgg
agccggatcctgtccatccagaaagatctggccaacatagctgaggtggaggtctcaatc
cctgccaaactacacaactctctcattggcaccaagggtcgtctgatccgctccatcatg
gaggaatgtggtggcgtccatattcactttcctgtggaaggttctggtagtgacactgtt
gtcatcaggggtccttcctcagatgtggagaaggccaagaagcagcttctgcacctggct
gaggagaagcaaaccaagagttttactgtggacatccgagccaagccagaataccacaaa
ttcctcattggcaaagggggaggtaaaatccgcaaggtgcgtgacagtactggagcccgc
atcatatttccggctgctgaggataaggaccaggacctgataacaatcataggaaaggaa
gatgctgtccgtgaggcacaaaaggagctggaagcattgatccagaacctggataatgtg
gttgaagactacatgctggtggaccccagacaccaccgccattttgttatccgaagagga
caggtattacgagagattgctgaagaatatggcggggtgatggtcagcttcccacgctct
ggcacacagagtgacaaagtcactctcaagggtgccaaagactgtgtggaggcagccaag
aagcgaattcaggaaatcattgaggatctggaagctcaagtaacggtggaatgtgctata
ccccagaagtttcatcgttcggtcatgggtcccaaaggttcaagaatccagcagatcact
cgggactacaatgttcaaattaagttcccagacagagaggaaaacccagttcacagtgta
gagccttccatccaggagaatggagatgaggctggagagggcagagaggccaaggagacc
gacccgggctctcccaggaggtgtgacatcatagttatctctggccggaaagagaaatgt
gaggctgccaaggaagccctggaggcactggttccagtcaccatcgaggtagaggtaccc
tttgatcttcaccgctacatcattgggcagaaaggaagtggaatccgcaagatgatggat
gagtttgaggtgaatatacatgtgccagcccccgaactgcagtcacacaccattgccatc
actggccttgcagcaaatttggacagggctaaggcggggctactggatcgagtaaaggag
ctgcaggctgagcaggaagatcgggctttaaggagttttaagctgagtgtcactgtagac
cccaaataccatcccaaaattatcgggagaaaaggggcagtgatcacacagatccgattg
gaacatgatgtgaacatccaatttcctgataaggacgatgggaatcagccccaggaccaa
atcaccatcacagggtatgagaagaacactgaagctgcccgtgatgctatcctgaaaatt
gtgggtgagcttgagcagatggtttctgaggatgttcccttggatcaccgtgtgcatgcc
cgaatcattggtgccagaggcaaagccatccggaaaatcatggatgagttcaaggtggac
attcgcttcccacagagcggagctccagaccctaactgcgtcactgtgacaggactcccg
gagaatgtggaggaagctatcgaccatatcctcaacctagaagaggaatatctggctgat
gtggtggacagtgaggcgctgcaagtttacatgaagcccccagcacatgaagagtccaag
gcaccatccaaaggctttgtggtgcgagatgctccctggacctccaacagcagtgagaag
gctcctgatatgagcagctctgaagaattccccagctttggggctcaagtggcccccaag
accctcccgtggggccccaaacgataa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (18)   
   UniProt (2)   
   RefSeq(pep) (16)   
DNA sequence (24)   
   RefSeq(nuc) (16)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (51)   

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