KEGG   Rattus norvegicus (rat): 65027
Entry
65027             CDS       T01003                                 
Symbol
Chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
  KO
K04494  chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04310  Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    65027 (Chd8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    65027 (Chd8)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    65027 (Chd8)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Chromo BRK ResIII DEAD HDA2-3 MUN Myb_DNA-bind_7
Other DBs
NCBI-GeneID: 65027
NCBI-ProteinID: NP_001334590
RGD: 620696
Ensembl: ENSRNOG00000025011
UniProt: Q9JIX5
Position
15:complement(27379285..27438959)
AA seq 2581 aa
MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGN
SSASDLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLL
QVSKSQEILSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQA
QGITSTAQPLVAGTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQ
PSRPVKQLVLQPVKGSAPAGNPGATGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQ
GHRHVVLGSLPGKIVLQGNQLAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSS
QPQPQPPPSAQPLTLSSVQQAQIMGPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVK
VLSASEVAALSSPASCAPHTAGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNI
PRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTAAASKTKGKSKLNTITPVV
GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEE
EVDVTGPIKPEPILPEPVPEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSG
QYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFN
PDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQS
RHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGL
GKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQ
QYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL
LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN
MPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDK
LLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDS
DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR
NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDD
EGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKK
ADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHT
YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENI
KSFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDIHKADWIRKYNPDTL
FQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEV
PTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSD
LVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEISVIDGDEAPVTQQPGHLFWP
PGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIARREKQQRWTR
REQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRL
PPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGLEL
PKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASAASLSRC
STPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPSLDSLTLKLEDEVVARSRLTPQD
YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDE
KEEKLTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVL
INRIDLVCQAVLSGKWPSNRRSQEMTTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSS
AASMVEEEASAVTTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMANGVMGDGH
PLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMW
LQGHPEFAVDPRFLAYMEERRKQKWQRCKKNNKTELNCLGMEPVQPANSRNGKKGHYAET
AFNRVLPGPIAPENSKKRVRRTRPDLSKMMALMQGGSTGSLSLHNTFQHSSSNLQSVSSL
GHSSATSASLPFMPFVMGGAAAPPHVDSSTMLHHHHHHPHPHHHHHHHPGLRTTGYPSSP
ATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSDDAD
D
NT seq 7746 nt   +upstreamnt  +downstreamnt
atggcagaccccatcatggatctgtttgatgacccaaacttatttggcctggattctttg
actgatgacagctttaatcaggtcactcaagaccccattgaagaagcacttggactgcca
agttctctggactccttggatcagatgaaccaagatggtggaagtggtgatgtggggaat
tcatcagcaagtgacctggttcccccaccagaggaaacagcttccactgaacttcccaaa
gaatccacagctccagctccagaatccttaaccttgcatgattataccactcagcccacc
agccaggagcagccagcccaacctgtcttgcagacatcaacaccaacatcaggacttttg
caggtctctaagagccaggagatcctgagccaagggaatcctttcatgggtgtctctgcc
acagctgtctcccccagtaatactggaggacagccatctcagtcagctcctaagattgtt
attcttaaagctccaccaaactcctcagtcacaggtgcccatgtggcacaaattcaggcc
caaggtatcaccagtacagctcagcccctagtggctggcacagccaatggtggaaaagtc
acttttaccaaagtgcttactggtacacccctccgaccaggtgtatccattgtctctggt
aatacagtgctggccacgaaggtccctgggaaccaggctgctgttcagcgcattgtccag
ccaagccgaccagtaaagcagctagttctccagccagttaagggttccgctcctgctgga
aatcccggggctaccgggccccccctgaagcctgcagttacactgacatctacacctgcc
cagggtgaatcgaaacgcatcactttggtccttcagcagccacagtccggaggtccccaa
ggacatcggcatgttgtgttagggagtctacccggcaagatagtgttacagggcaaccaa
ctggcagccttgactcaagccaagagtgctcaggggcagcctgccaaagtagtcaccatc
caactgcaggtgcagcagccacagcaaaagatccagattgtaccacagcccccatcatca
cagccacagccacagccgccaccctcagcccaaccattgaccctgtcctctgtacagcag
gctcagataatgggaccaggccaaaacccaggacagagactttctgtaccgctcaagatg
gtgctgcagccacaggctggctcttctcagggagcctcttctggactctctgtggttaaa
gttctaagtgccagtgaagtggcagccctgtcatcaccagcaagctgtgcccctcacact
gcagggaagactggaatggaggagaaccgcaggcttgagcaccagaaaaagcaagaaaaa
gcaaatcggattgtggcagaggccattgctagggcccgggccaggggtgagcaaaacata
cctcgagtcctgaatgaggatgagctgcctagtgtccggccagaagaggagggtgaaaag
aaacgcaggaagaagagcagtggagaaaggctgaaggaagagaagccaaagaaaagcaag
actgctgctgcctccaaaacaaagggcaagagtaagctaaacaccatcactcctgtagtg
ggcaaaaagagaaagcgtaacacatcgtctgacaactctgatgtggaggtcatgcctgca
cagtcgccccgggaggacgaagagagcagcatccagaagagacgttcaaaccgccaagtt
aagcgaaaaaaatatacagaggacctggatataaagataacagatgatgaagaggaggag
gaggtcgatgttactggtccaataaaacccgagcccatcctcccagaaccagtgccagag
cctgatggggagactctgccttccatgcagttctttgtggagaatcccagtgaagaagac
gcagctattgtggacaaagtgctttccatgcgagttgtgaagaaagagcttccttctgga
cagtacactgaggctgaggaattctttgtcaagtacaagaactactcctatctgcactgt
gaatgggcaactatctcccagctggagaaggacaagaggatccatcagaagctaaagcgc
ttcaagacgaaaatggctcagatgaggcacttctttcatgaagatgaagagcctttcaat
ccagactacgtcgaggtggacaggatactggacgagtctcacagtgtggacaaggataat
ggtgagcctgtaatctactacctggtaaaatggtgctctctgccctatgaggacagtacg
tgggagctaaaagaggatgttgacgagggcaagattcgggaatttaaacggatccagtca
aggcatccagaactcaaaagggtgaatcgtccacaggcaaatgcctggaagaaattggag
ttgtcacatgaatataaaaacagaaaccaattacgggagtatcagttagaaggggtcaac
tggcttctctttaattggtataacaggcagaactgcatcctggctgatgaaatgggatta
ggcaaaaccattcagtccattgccttcttgcaggaggtatataatgtgggcatccatggt
ccctttttggtcattgctccattgtccaccattactaactgggagcgagaatttaatacc
tggacagagatgaacactattgtgtaccatggcagcctggccagccggcagatgattcag
caatatgaaatgtactgtaaagattcacggggtcgcctcatcccaggtgcatataagttt
gatgccttgatcaccacttttgagatgattttgtcagactgtcctgaacttcgtgaaatt
gaatggcgttgtgttatcattgatgaagcccatcggctaaagaaccgtaattgtaagcta
ctcgatagcctcaagcacatggacctggagcataaagtgttacttacaggaacaccattg
caaaatactgtagaggagctgttcagcctacttcatttcttggaaccttctcagtttccc
tcagaatcagaattccttaaggattttggggatctgaagacagaggagcaggttcaaaag
cttcaggccattctaaagccaatgatgctgagaagactcaaagaggatgttgaaaagaat
ttggctcccaaacaggagactattattgaagtagagctgaccaacatccagaagaaatac
tacagagctattttagagaagaatttctccttcctttccaaaggagcagggcataccaat
atgcctaacctcctgaacacgatgatggagttacgcaagtgctgcaaccacccatacctc
atcaatggtgcagaagagaaaatcctgatggaatttcgggaagcttgccatattatacct
caagatttccatctgcaggccatggttcggtcagctggcaaattagttcttattgacaag
ttacttccaaagcttaaagctggtggccataaagttctgatcttctcccagatggtacgc
tgtctagatattctggaggattatctgatccagaggaggtacttatacgaacgcattgat
gggcgagttagaggcaaccttcgacaagctgctatcgaccgctttagcaagcctgactca
gaccgctttgtcttcttgctatgtacccgtgctggtggacttggtattaatcttacagct
gctgatacctgtattatttttgattcagactggaatccacagaatgacctgcaggcccaa
gcacgttgtcatcgcattggacagagcaaagctgtaaaggtgtaccgactcatcactcgc
aattcctacgagagagagatgtttgataaagctagcctcaagttggggctggacaaagct
gtgcttcagtccatgagtggtcgggatggcaacattactggaattcaacagttctccaag
aaagagattgaagatctcttaaggaaaggtgcatatgcagccataatggaggaagacgat
gagggttctaagttttgtgaagaggacatagatcagatcttgctgagacggactacaacc
atcactattgagtctgaagggaaagggtctacttttgccaaggcaagctttgttgcttct
gaaaataggacagatatttccctggatgatccaaacttttggcaaaaatgggccaaaaag
gcagacctagacatggatctgctgaatagtaagaataacttagtgattgatacaccacga
gttcggaaacagactcgacacttcagcactctaaaagatgacgacctggttgagttttct
gatttagaaagtgaagatgatgaacgtccccgttcccgaagacatgaccgtcatcacacc
tatgggcgcactgactgctttcgggtagaaaaacatctcctggtatatggttggggacgt
tggagagatattctgtctcatggacgatttaagcggcgcatgactgaaagagatgtggag
acaatatgccgagccatccttgtgtactgtcttctacactaccgtggggatgaaaacatc
aaaagcttcatttgggacttgattagccctgctgaaaatggcaagacaaaagaattgcag
aatcattcaggtctgtctatccctgtgccccgtgggcgtaaggggaaaaaagtgaagtca
caaagtacttttgacattcataaggcagactggatccggaaatataaccctgatactctg
ttccaagacgagagctataagaagcacttgaaacatcagtgtaacaaggtactgttgaga
gtacggatgctgtactacctgagacaggaggtcattggagaccaagcagagaaggtgtta
gggggcgccatagccagtgagattgacatatggttcccagtagtggatcagctggaggtt
ccaacaacatggtgggatagtgaggctgacaaatccctgctcattggcgtttttaagcat
ggctatgaaaaatacaataccatgagggcagaccctgccttgtgtttcctggaaaaagct
ggcaggccagatgacaaagccattgcagcggagcacagagttctggataacttctccgac
ctggtagaagggattgactttgataaggattgtgaagatcctgaatataaaccccttcag
ggtcccccaaaggacccggatgatgagggtgatcccttgatgatgatggatgaggagatc
tcagtcattgacggagatgaagccccggtgactcaacagccagggcatttattctggcct
ccaggctctgccctcacagctaggctccgccgcctggtaaccgcctatcaacgcagctac
aagagagaacaaatgaagatagaggctgcggagcgtggggaccggagacgccgacgttgt
gaagcggcctttaagctcaaagaaattgcaaggcgggaaaaacaacaacgatggacacgg
cgcgagcaaactgatttctatcgagtagtgtctacctttggggtagagtacgaccctgac
aacatgcagtttcactgggatcgcttccgtacttttgctcgcctggacaaaaaaacagat
gaaagccttaccaagtacttccatggttttgtggccatgtgtagacaagtgtgccgcctt
cccccagctgctggtgatgaacctccagatcctaatctgtttattgagcccatcactgaa
gagagagcatcacggactctctaccgaatcgagttgcttcgacgcttacgggaacaagtt
ttatgccacccccttttagaagatcggctggcattgtgtcagcctccaggtcttgaattg
cccaaatggtgggaacctgtccgtcacgatggggagctcctccgaggagcagcccgccat
ggggtgagccaaacagactgcaacatcatgcaggacccagacttctcttttctggctgcc
cgtatgaattatatgcagaaccatcaggcaggagcatcagctgcatccctgtcacgatgc
tccactccactgctgcaccagcagtgtacctcacgcactgcttcaccatcacccctgcgc
ccagatgttcctgctgaaaagtcacctgaggagaatgctgttcaggtccccagtctggac
agtctgactttaaaactagaggatgaggtggtggctaggagccgactcaccccacaagac
tatgaaattcgtgtagcctcttcagatacagcccctctgtcccggagtgttccgccagtc
aaactggaggatgacgatgattcagactctgagctggacttgagcaagttgtcaccatcg
tcctcttcatcttcatcctcctccagctccagctccagcagtgatgagagtgaagatgag
aaggaagagaagttaactgctgaccggtcccgcccaaagctctatgatgaagagagcctt
ctgtcccttactatgtcccaagatggattcccaaatgaagatggagaacaaatgacccct
gagttgctgctgctgcaggaaagacaaagagcctctgaatggcccaaggatcgtgttctg
ataaaccgcattgacctcgtctgccaggctgtactctcagggaaatggccttctaaccgc
cggagccaggaaatgacaacaggaggaattttggggccaggaaaccatttattagacagt
ccctctttgaccccaggagaatatggggactctccggtccccacaccacgaagcagcagt
gcagcttccatggtagaggaagaagcatctgcggtcaccacagcagcagcccaatttact
aaacttcggcgaggcatggacgagaaagagtttacagttcagatcaaagatgaagaagga
ttgaagttaacattccagaagcatagattgatggctaatggtgtaatgggagatggacat
ccactgtttcataagaagaaggggaacaggaaaaagctagtagagctggaggtggagtgc
atggaagagcctaatcaccttgatgtggacctggagacccggatccctgtcatcaataag
gtggatggtactttgctggtgggtgatgaggcccctcgccgggcggagctggacatgtgg
ttacagggtcatccagagtttgctgttgatccccgatttctagcgtatatggaggaacgt
agaaaacagaagtggcagagatgtaaaaaaaataataagacagaattgaactgtttggga
atggaaccagtccagccagccaactctagaaatgggaaaaagggtcactatgctgaaact
gcgttcaaccgggttttgccagggcctattgcaccagaaaacagcaagaaacgggtccgc
aggacaagaccagacctttctaagatgatggccctgatgcagggtggaagcactgggtcc
ctatctctgcataacacctttcaacacagcagtagtaacctacagtctgtgtcgtctctg
ggtcacagcagtgccacttctgcatctctgcctttcatgccgtttgtgatgggtggtgca
gcagcaccccctcatgtagactccagcaccatgcttcatcatcaccaccaccacccccac
ccccaccatcaccaccatcaccatccaggcttgagaaccactggctacccttcttcacca
gctactaccacctctggtactgccttgcggttaccaacactgcagcatgaggacgatgat
gaagaggaggatgaagatgatgatgatttatctcagggctatgatagctcagaaagggac
ttctcactcattgatgaccctatgatgccagccaactcagactccagtgatgatgctgac
gactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (40)   

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