KEGG   Rattus norvegicus (rat): 679140
Entry
679140            CDS       T01003                                 
Symbol
Exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    679140 (Exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    679140 (Exosc1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     679140 (Exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     679140 (Exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 679140
NCBI-ProteinID: NP_001388162
RGD: 1591855
Ensembl: ENSRNOG00000048708
Position
1:complement(250684746..250694748)
AA seq 195 aa
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKTSENGALPVVSVMRETE
SQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYK
SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq 588 nt   +upstreamnt  +downstreamnt
atggcaccacctgtgaggtactgcatcccgggcgaacgtctgtgtaacttggaggaaggc
agcccgggcagcggcacctacacccggcacggctacatcttttcgtcgctggctggctgc
ctgacgaagaccagcgagaatggcgcgcttcccgtggtatcagtaatgagagagacagag
tcccagttacttccagatgtgggagctgtcgtcacctgtaaggtctctagcatcaactca
cgttttgccaaagtacacatcctgtatgtaggatcgacaccacttaaaaatgcttttcgg
ggaactatccgcaaggaagatattcgagcaactgaaaaagacaaggtagaaatttacaag
agtttccggccaggtgatatagttttggccaaagttatctccctaggtgatgcacagtcc
aattacctgctgacgactgctgaaaatgagttaggggttgtggtggcccacagtgagtca
ggtgtccagatggtccccatcagctggtgtgagatgcagtgccccaagacccacactaaa
gaattccgaaaagtagccagagtacagcctgagttcttacaaacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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