KEGG   Rattus norvegicus (rat): 679312
Entry
679312            CDS       T01003                                 
Symbol
Tubb1
Name
(RefSeq) tubulin beta-1 chain isoform X1
  KO
K07375  tubulin beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04540  Gap junction
rno04814  Motor proteins
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    679312 (Tubb1)
  09144 Cellular community - eukaryotes
   04540 Gap junction
    679312 (Tubb1)
  09142 Cell motility
   04814 Motor proteins
    679312 (Tubb1)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    679312 (Tubb1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    679312 (Tubb1)
   05012 Parkinson disease
    679312 (Tubb1)
   05014 Amyotrophic lateral sclerosis
    679312 (Tubb1)
   05016 Huntington disease
    679312 (Tubb1)
   05020 Prion disease
    679312 (Tubb1)
   05022 Pathways of neurodegeneration - multiple diseases
    679312 (Tubb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    679312 (Tubb1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    679312 (Tubb1)
   04147 Exosome [BR:rno04147]
    679312 (Tubb1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     679312 (Tubb1)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    679312 (Tubb1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   679312 (Tubb1)
  Exosomal proteins of colorectal cancer cells
   679312 (Tubb1)
  Exosomal proteins of bladder cancer cells
   679312 (Tubb1)
SSDB
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_2 Tubulin_3
Other DBs
NCBI-GeneID: 679312
NCBI-ProteinID: XP_003749686
RGD: 1589557
Ensembl: ENSRNOG00000046151
UniProt: A6KL34 M0R8B6
Position
3:183666189..183675656
AA seq 452 aa
MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYV
PRAVLVDLEPGTMDSIRSSRLGILFQPDSFVHGNSGAGNNWAKGHYTEGAELIETVMDVV
RRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVV
EPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIM
AACDPRRGRYLTVACIFRGKMSTKEVDQQLLSIQTRNSNCFVEWIPNNVKVAVCDIPPRG
LNMAATFLGNNTAIQELFTRVSEHFSAMFRRRAFVHWYTSEGMDISEFGEAEADILDLVS
EYQQFQDVRAGLEDIEEGGEEEAEMGAEDKNH
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgcgggaaatcgtgcacattcagattggccagtgtggcaaccagatcggagccaagttc
tgggaggtgatcggggaagaacatgggattgactgcgctgggagctactgcgggacttca
gcccttcagctggagagaatcagcgtttactacaacgaagcctacggtaagaagtacgtg
ccccgagctgtccttgtggacctggaacctgggacaatggacagcatccgatccagcaga
ttgggaatcctctttcagcctgacagttttgttcacggtaactctggtgctggtaacaat
tgggccaagggccactacacagagggagcggagctgatcgagacggtcatggatgtggtg
aggagagagagcgagagctgcgactgcctgcaaggtttccagatcgtgcactctctgggt
ggaggcacaggctcaggcatgggcaccctgctcatgaacaagatcagggaggagtacccg
gatcggatccttaattcctttagcgtcatgccgtcccccaaggtgtcagacaccgtggta
gagccctacaacgcggtgctctccatccaccagctgatagagaacacagatgcctgcttc
tgcatcgacaacgaagcactctacgatatctgtttccgcaccctgaggctgaccacgccc
acttacggggacctcaaccacctggtgtccttgaccatgagtgggatcacgacctcactg
cgttttccgggccagcttaatgcagacctgcgcaagctggcagtgaatatggtgcccttt
cctcgtcttcacttcttcatgcctggcttcgctccactcacagcccagggtagccagcag
taccgagccctctcagtggcggagctcacccaacagatgttcgatgcccgcaacatcatg
gctgcctgtgatcctcgccgtggccgctacctgactgtggcttgtatcttccggggtaag
atgtccaccaaggaagtggatcaacagctgctgtccattcagacaaggaacagcaactgc
tttgtggaatggatccccaacaatgtcaaggtagctgtgtgtgacatcccaccccgggga
ctgaacatggcggctaccttcctgggtaacaatacagccattcaagagctcttcacccgg
gtctctgagcacttctcagccatgttcaggaggagagcttttgtgcactggtacaccagt
gaagggatggacataagtgagtttggggaagcggaggcagacatcctcgacctggtgtcc
gagtaccaacaattccaagatgtccgagcagggctagaggacatcgaagagggtggggag
gaggaggcagagatgggggcagaagacaaaaaccattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (10)   
   KEGG PATHWAY (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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