KEGG   Rattus norvegicus (rat): 680532
Entry
680532            CDS       T01003                                 
Symbol
Sem1
Name
(RefSeq) 26S proteasome complex subunit SEM1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03050  Proteasome
rno03440  Homologous recombination
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    680532 (Sem1)
  09124 Replication and repair
   03440 Homologous recombination
    680532 (Sem1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    680532 (Sem1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    680532 (Sem1)
   05012 Parkinson disease
    680532 (Sem1)
   05014 Amyotrophic lateral sclerosis
    680532 (Sem1)
   05016 Huntington disease
    680532 (Sem1)
   05017 Spinocerebellar ataxia
    680532 (Sem1)
   05020 Prion disease
    680532 (Sem1)
   05022 Pathways of neurodegeneration - multiple diseases
    680532 (Sem1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    680532 (Sem1)
   04131 Membrane trafficking [BR:rno04131]
    680532 (Sem1)
   03051 Proteasome [BR:rno03051]
    680532 (Sem1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    680532 (Sem1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     680532 (Sem1)
Membrane trafficking [BR:rno04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    680532 (Sem1)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     680532 (Sem1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     680532 (Sem1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 680532
NCBI-ProteinID: NP_001119562
RGD: 1590628
Ensembl: ENSRNOG00000010420
UniProt: D3ZHW9 A6IDU4
Structure
Position
4:complement(35638306..35658462)
AA seq 70 aa
MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
NT seq 213 nt   +upstreamnt  +downstreamnt
atgtccgagaagaagcagcctgtcgacttgggtctcctggaagaggacgacgagttcgag
gagtttcccgcggaagactgggccggcttagatgaagatgaagatgcacatgtctgggag
gataattgggatgatgacaatgtagaagacgacttctccaatcagttacgcgctgagctg
gagaagcatggttacaagatggagacttcatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (10)   
   KEGG PATHWAY (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (4)   
   PDB (4)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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