KEGG   Rattus norvegicus (rat): 680915
Entry
680915            CDS       T01003                                 
Symbol
Mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    680915 (Mbd4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    680915 (Mbd4)
   03400 DNA repair and recombination proteins [BR:rno03400]
    680915 (Mbd4)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    680915 (Mbd4)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     680915 (Mbd4)
SSDB
Motif
Pfam: MBD HhH-GPD
Other DBs
NCBI-GeneID: 680915
NCBI-ProteinID: NP_001414177
RGD: 1585874
Ensembl: ENSRNOG00000010919
Position
4:complement(150565646..150577433)
AA seq 566 aa
MESPSLGDNNVPSVTAGKSLVSDPPWDRCKEDVAVGLGGVGEDGKDLVISSECGSLLQEP
AASTLPSCTTVAECHKPVPCGWERVVKQRLSGKTAGRVDVYFISPQGSKFRSKRSLANYL
LKTGETCLKPEDFDFTVLSKGGINPGYKHQSLSAPASQQPNEADISKLNLRTRSKWKTDV
LPLPGGNSESPDSNSLSNSNSARLLLKEHKGIQDADSGKSRKPKIKVTVLKGIASQRTKQ
RCRKSPSDSTGRNRKRLCTVQKADTDSELVPQESRLHRTVCPADACARATVSLVREAKGL
GEEKSPSSDLRFTQVTSSITNKLYSTEAAGEATREATREQTFLESEEIRSKGEEEEAHLH
IDILQSGSETPSCSQAKKHLTSETFREDSIPRTQVEKRKTSLYFSSKYNKEALSPPRRKA
FKKWTPPRSPFNLVQETLFHDPWKLLISTIFLNRTSGKMAIPVLWEFLEKYPSAEVARTA
DWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKPWRYPIELHGIGKYGNDSYRIFCVNEWK
QVHPEDHKLNKYHDWLWENHEKLSLS
NT seq 1701 nt   +upstreamnt  +downstreamnt
atggagagcccaagccttggggacaacaatgtcccctccgtcactgctggaaagagccta
gtttcagaccctccctgggaccgctgcaaggaagacgttgctgtcggactgggaggagtg
ggtgaagatggaaaggacctggtgataagcagtgagtgtggctcccttctccaggagcct
gctgcttctactctgcctagttgtactacagtggcagaatgccacaagcctgtcccctgt
ggatgggaaagagttgtgaagcaaaggttatctgggaaaactgcaggaagagttgatgta
tactttatcagcccacaaggatcaaagttcagatcaaaacgttcacttgctaattatctt
ctcaaaactggagagacttgtcttaagcctgaagattttgattttactgtactgtctaaa
gggggcatcaatccaggttataaacaccaaagtttgtcagctccagcttcccagcagcca
aatgaagctgacatttcaaagctaaacctcaggacacgaagcaagtggaaaacagacgta
ttgcctctgcccggtggtaattcagagtctccagatagcaacagcctgtccaactctaac
tctgcccgtttgctattgaaagaacataagggcattcaggatgctgactctgggaagagc
agaaagcccaaaataaaggtgactgttttgaaaggaattgcaagtcagagaaccaaacaa
aggtgcaggaagagtccctcagattctactggaagaaacagaaaaagactatgtacagtt
cagaaagcagatactgatagcgagctagttccacaggaaagtcgactccacagaactgtc
tgccctgcagacgcctgtgcaagggcgactgtcagcttggttagggaagcaaagggcctg
ggagaagaaaaatcaccaagctcggatcttcgtttcacacaagtaacttctagcatcaca
aacaaattatattcaactgaagcagcaggtgaagcaacacgtgaagcaacacgtgagcag
acctttttagaatcagaggaaatcagatcgaagggagaagaggaggaggcacatttgcat
attgacattttacagagtggctctgaaacacccagctgctcacaagccaagaaacacttg
acttctgagacatttcgagaagacagcatcccacgaacacaggtagaaaaaaggaaaaca
agcctgtatttttccagcaagtacaacaaagaagctcttagccccccaagacgcaaagcc
ttcaagaaatggacccctcctcggtcacctttcaatcttgttcaagaaacacttttccat
gatccatggaagctcctcatctcaactatatttctcaatcggacctcaggcaagatggcc
atccccgtgctgtgggagtttctagagaagtacccttcagctgaagtggcccggactgct
gactggagggacgtgtcagaacttcttaagcctcttggtctctatgatctccgtgcaaaa
accatcatcaagttctcagatgaatatctgacaaagccgtggaggtatccgattgagctt
catgggattggtaaatatggcaacgactcctaccggatcttttgtgtcaatgagtggaag
caggtgcaccctgaagaccacaagttaaataaataccatgactggctttgggaaaatcat
gagaaactaagtctatcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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