KEGG   Rattus norvegicus (rat): 681004
Entry
681004            CDS       T01003                                 
Symbol
Paxbp1
Name
(RefSeq) GC-rich sequence DNA-binding factor 1
  KO
K13211  GC-rich sequence DNA-binding factor
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    681004 (Paxbp1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    681004 (Paxbp1)
SSDB
Motif
Pfam: GCFC DUF562
Other DBs
NCBI-GeneID: 681004
NCBI-ProteinID: NP_001413921
RGD: 1584739
Ensembl: ENSRNOG00000002036
Position
11:complement(43758116..43787624)
AA seq 918 aa
MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPASGEEPGPGGGDRAPAGESLLGPG
PPPPPSAHTPGLGAEAGGGIPGGAEPGNGLKQRKRPRENKEVPRASLLSFQDEEEENEEV
FKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELSAAADSDQPLDKMCHAKDTNPEDGVVI
SEHGEDEMDMESEKEEEKPKAGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQLARELG
DFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDA
LVTGEQDEELSRWEQEQIRKGINIPQVQASQPTEVNMYYQNTYQTMPYGASYGVPYSYTA
YGSSDAKSQKSDNTVPFKTPSNEAAPITIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQS
RVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQR
ASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRR
RQAREQTGQMADHLEGLSSDDEETSTDITNFNLERDRILKESSKVFEDVLESFCSIDCIK
AQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFY
GCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYP
SVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKL
LGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIRKAQNVINCFPKQWFVN
LKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAV
SVASDHNVKEVKSLIEGK
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgttccgaaaggcccggcgggtgaacgtgcgcaagcggaatgactcggaggaggaggag
cgggagcgagatgaagagcaggagccgccgccgttgctaccgccgccggcctcgggcgaa
gagcctggccctggcggcggcgacagggcccccgcgggggaatcgctcctgggcccgggg
ccgccgccgccgccctccgcgcataccccgggcctgggcgccgaggctgggggcggcatc
cctggtggcgcggagcccggcaacgggctgaagcagcgcaagaggcctcgcgagaacaaa
gaggtgcccagggccagcctgctgagcttccaggacgaggaggaagaaaatgaagaagtg
ttcaaggtaaagaaatcaagttacagcaaaaagatagttaaattgcttaagaaagaatat
aaagaagaccttgaaaaatcaaagatcaagacagaactcagcgcagcggctgacagtgac
cagcctctggacaaaatgtgtcatgctaaggacacaaatccagaagatggtgttgtcatt
agcgagcacggtgaagacgagatggacatggagagcgagaaggaggaggagaagcccaag
gctgggggtgccttctccaatgctctgtcttccctgaacgtgctccgcccaggagaaatt
ccagatgcagcttttatccatgctgcaagaaaaaagcgccaactggcccgggaactggga
gacttcactcctcatgacagtgagcctggtaaaggccgccttgtccgagaggatgagaat
gatgccagcgatgatgaggatgatgatgagaaacgccggatcgttttttctgtgaaggaa
aagtcacaaagacaaaagatcgctgaggagataggtattgaggggagtgacgatgatgcc
ttagtaactggagagcaagacgaagagctcagccgctgggagcaggaacagattagaaag
ggaattaacatccctcaggttcaagcaagtcagcccactgaagtgaatatgtactaccag
aacacttaccagacaatgccttatggtgcatcctatggcgtaccttatagttatacagcc
tatggatcatcagatgccaagtctcaaaaatcagataacacagtccctttcaaaactccc
agtaacgaggcggctcccattactattgatttggtaaagaaacagcttaaagacaggttg
gactccatgaaagaattgcacaaaaccaatcgacagcagcatgaaaaacacctgcaaagc
cgagtggactccaccagggccattgagagactagaagggtcttctgggggcattggtgaa
cggtataaatttttgcaagaaatgcgagggtatgtccaagacttgcttgagtgtttcagt
gaaaaggtgccgctgattaatgaacttgaatcagcaatacatcagctgtacaaacagcga
gcttcccgccttgtccaaagacgacaagatgatattaaagatgaatcttcggagttttca
agccattcaaataaagctctgatggcaccaaatcttgattcctttggacgtgatcgggca
ctttatcaagaacatgcgaaacgtcggattgcagagcgggaagccaggaggactcgccgt
cggcaagccagagagcaaaccggccagatggcagatcaccttgaaggcctgtccagcgat
gatgaagagacgtctacagacattaccaatttcaatctggagagagaccgaattttgaaa
gagtccagcaaagtttttgaagatgtccttgagagtttctgttcaattgactgcattaaa
gcacagtttgaagcgtggcgttcaaaatactacatgtcctataaggatgcgtacattggt
ctttgtttgccaaaactgttcaaccctctcatcagacttcagctcctcacctggactcct
cttgaggcaaaatgccgtgactttgaaaatatgctgtggtttgaatctctgctgttctat
ggttgtgaagagcgagaacaagagaaggatgatgttgacgtagctctgctgcccaccatt
gtggagaaggtcattcttcccaagctgacagtgatagctgagaacatgtgggatcccttt
tccacaacgcagacgtcgagaatggtcggaatcactctgaagttaataaatggctatcct
tcagtagtcaatgcagagaataagaacacacaggtttaccttaaagcacttttattgagg
atgagaagaactttggatgatgatgtattcatgcctctgtatcccaaaaatgttttagaa
aataaaaattctgggccttacttattttttcaacgacagttttggtcttctgtcaagcta
ttgggaaattttcttcagtggtacggcattttctcaaacaaaactcttcaggagttatca
atagacggcttgttaaacagatacatcctcatggcttttcagaactcagaatacggagat
gacagcatcagaaaagcccaaaatgtaatcaactgtttccctaaacagtggtttgtgaat
ctgaaaggagaaagaactatttctcagttagaaaatttttgtcgatatcttgtacattta
gcagatacaatttacaggaacagtattgggtgctctgatgtggaaaaaagaaatgcaagg
gaaaatataaaacagatagtgaaactccttgcaagtgttcgggctttggatcatgctgta
tctgttgcaagtgaccacaatgtgaaagaagtcaagtctctgattgaaggaaaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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