KEGG   Rattus norvegicus (rat): 681012
Entry
681012            CDS       T01003                                 
Symbol
Smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
  KO
K11125  protein SMG5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    681012 (Smg5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    681012 (Smg5)
   03032 DNA replication proteins [BR:rno03032]
    681012 (Smg5)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     681012 (Smg5)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     681012 (Smg5)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    681012 (Smg5)
SSDB
Motif
Pfam: EST1_DNA_bind EST1 PIN_4
Other DBs
NCBI-GeneID: 681012
NCBI-ProteinID: XP_038959679
RGD: 1584731
Ensembl: ENSRNOG00000019590
Vega: OTTRNOG00000002059
Position
2:176102812..176129925
AA seq 1018 aa
MEVLALLRLVKKEELRDSCSLPLLTLAVVEAVHRLDLILCNKTAYQEVFKPENVSLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLG
DLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYSVEAMYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKSETRKLSPSKKRCKDIKRLLVNFMYLQSLLQ
PKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPSLGLTNEDEEECESGYAFLPDLLIFQMA
IICLMGVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVSAFQSDGTD
EPESKEALEKEEPEPEPPTVVPQADEGRKSRKHSRLSCLRRRRRHHPPKAGDDSDLSEGF
ESDSSHDSAQASDGSDSGSDKSLEGRGTAFDAETDSEMNSQESRSDLEDIEDEEGTRSPA
QEPPQTRSEVPDSLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTAEP
NSVASHRPCVNGDMEKPLEPASEDGSESEGSESSSRSCRNERSLQEKLQALMAEGLLPAV
KVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPASGELQDSGLALCSEVQGLLEGCE
LPDLPASLLLPEDMALRNLPPLRAAHRRFNFDADRPLLSALEESVVRICYIRSFGHFVAR
LQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAEEEARRNRLMRDMAQLRLQLEVS
QLEGSLQQPKAQSAMSPYLIPDTQALCYHLPVIRQLATSGRFIIIIPRTVIDGLDLLKKE
QPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCRQLTLA
QGAGEEDPSGMVTIITGLHLDNPSALSGPMQAALQAAAHASVDVKNVLDFYRQWKEIG
NT seq 3057 nt   +upstreamnt  +downstreamnt
atggaggtgcttgcactgctcaggcttgtgaaaaaggaagagctgcgtgattcctgttcc
ctgcctcttctgactttggctgtggtggaggctgtgcatcggctagacctcatcctttgc
aacaaaactgcttatcaggaagtgtttaaaccagagaacgttagcctgaggaacaagctg
cgtgagctctgtgtgaagcttatgttcttgcacccagtagactatgggaggaaggctgag
gaactgctgtggagaaaggtatactatgaagtcatccaactcatcaagactaacaaaaag
cacatccacagtcggagcaccttggaatgtgcctacaggactcacctggtcgccggcatt
ggcttctaccagcatctccttctctatatccaatcccactaccagctggaactacagtgc
tgcattgactggactcatgtcactgatcccctcataggatgtaagaagccagtatctgct
tcaggaaaggagatggattgggcacagatggcatgccaccgatgtctggtgtacctgggg
gatctgtcacgctatcagaatgaactggctggtgtggacactgagctgctagctgagaga
ttctactatcaagccttgtcagtcgcgccccagattggaatgcccttcaaccagctgggc
actcttgcaggcagcaagtattacagtgtggaagccatgtactgttacttgcgctgcatc
cagtcggaagtgtcctttgagggagcctatgggaacctcaagagactctatgacaaggca
gcaaaaatgtaccaccagttgaagaagtctgagaccaggaagctctcccctagcaaaaag
cgatgcaaagacattaagaggttgttggtgaacttcatgtacctacaaagcctgttacag
cccaaaagtagctctgtggactcagaactgacctcactttgccagtcagtcctagaggat
ttcaacctctgcctcttctacctgccctcctcacccagccttggtctgacgaacgaggat
gaggaggagtgtgagagtggatatgctttcctgcccgacctgctcatctttcagatggcc
atcatctgccttatgggtgtgcacagtttaaaaagagcaggatccaagcagtatagtgca
gccattgctttcaccctggccctcttctcccaccttattaatcatgtcaacatacgactg
caggcagagctggaagagggcgagaaccctgtctcagcttttcagagtgatggcacagat
gaaccagagtcaaaagaagcactagaaaaagaggagccagagccagagcctcccactgtg
gtgccccaagccgatgagggtagaaagagtcgtaagcactcccgactctcttgtcttcgt
cgccgccgccgccaccaccctcctaaggctggtgatgacagtgacctgagtgagggtttt
gagtcagactctagccatgactctgcccaggccagtgatggatcagacagtggctctgac
aagagcctggaaggcaggggcactgcttttgatgcagaaacagactcagagatgaacagc
caggagtcccggtcagacctggaagatatagaggatgaagaggggacacggtctccagcc
caggagccccctcagaccagatcagaggttccagattccctcaatggccccttgggccct
agtgaggcaagcattgccagcaatttacaagccatgtccacccagatgttccagaccaag
cgctgcttccgactggctcccactttcagcaacctgctcctgcagcccaccgcagaacct
aacagtgtggccagtcataggccttgtgtcaacggggatatggagaaacctttagaacca
gcctctgaggatggctctgagtcagaggggagcgagtccagcagccgttcttgtcgcaac
gagcgcagccttcaggagaagctgcaggccctgatggctgagggcctccttcctgctgtg
aaggtcttcctggactggcttcgaaccaaccctgacctcatcattgtgtgtgcgcagagc
tctcaaagtttgtggaaccgcctgtctgtgttgctgaatctgttgccagcatctggtgag
ctccaggattctggcctggctctgtgttctgaagtccaaggtctccttgaaggctgcgag
ctgcctgacctccctgctagcctgttgctcccagaggacatggcactgcgtaacctacct
cctctccgggctgctcatagacgctttaacttcgatgcagatcggcccctgctcagtgct
ttagaggagtcggtggtgcgcatctgctatatccgcagcttcgggcattttgttgctcgc
ttacaaggcagcatcctgcagttcaatccagaggttggcatcttcgtcagcattgctcag
tctgagcaggagagcctgctgcagcaggctcaggcacagttccgtatggcagaggaggaa
gctcggcggaacaggctcatgagagacatggctcagctacgattacagctcgaggtctcc
caactggaagggagcctgcagcagcccaaagcccagtcagccatgtctccctacctcatc
cctgacacccaggccctctgctaccacctccctgtcatccgtcagctcgccaccagcggc
cgcttcatcatcatcattccaaggacagtgattgatggtctggatttgctgaagaaagaa
cagccaggggcccgggacgggatccggtacctggaggcagagtttaaaaagggaaacaga
tacattcgctgccagaaggaggtgggaaagagctttgagcggcataagctgaagcggcag
gatgcagatgcctggactctctataagatcctggacagctgcagacagctaaccctagcc
cagggggcaggggaggaggacccaagtggcatggtgaccattatcacaggccttcatttg
gacaaccccagtgcactctctgggcccatgcaggctgccctacaagctgctgcccatgcc
agtgtggacgtcaagaatgttctagacttctacaggcagtggaaggagattggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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